miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01010370.1/4472-4337 3694:Populus trichocarpa
Length = 136
Score = 238 bits (120), Expect = 1e-62
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 1 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 68
Query: 61 gcatgacttagcagccagacccaacagcgttgggtccaacagccaagccagacccaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gcatgacttagcagccagacccaacagcgttgggtccaacagccaagccagacccaatag 8
>RF00779;MIR474;AARH01016040.1/1806-1887 3694:Populus trichocarpa
Length = 82
Score = 87.7 bits (44), Expect = 3e-17
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
|||||||||||||| | |||| |||| ||||||||||||| |||||| |||||||||| |
Sbjct: 78 gaagtgttttgggcctaacttggcagtcagacccaacagcattgggtgcaacagccaaac 19
Query: 109 cagacccaatag 120
||||||||||||
Sbjct: 18 cagacccaatag 7
>RF00779;MIR474;AARH01010364.1/2836-2701 3694:Populus trichocarpa
Length = 136
Score = 85.7 bits (43), Expect = 1e-16
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 18 gcagcaagacccaacgttgttgctccttttagaagtgttttgggcatgacttagcagcca 77
|||||| ||||||||| ||||| ||||||| |||||||| ||||| || ||| ||||||
Sbjct: 110 gcagcatgacccaacgatgttgttccttttggaagtgttctgggcttggcttgacagcca 51
Query: 78 gacccaacagcgttgggtccaacagccaagccagacccaatag 120
| ||||||| |||| ||||| || ||||||||||||||||||
Sbjct: 50 gtcccaacaacgttacgtccagcaaccaagccagacccaatag 8
>RF00779;MIR474;AC216472.1/80331-80228 3694:Populus trichocarpa
Length = 104
Score = 83.8 bits (42), Expect = 5e-16
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 39 gctccttttagaagtgttttgggcatgacttagcagccagacccaacagcgttgggtcca 98
|||| |||| |||||||||||||| || ||||| ||||||||||||||| ||||||||||
Sbjct: 89 gctctttttggaagtgttttgggcctggcttagaagccagacccaacagtgttgggtcca 30
Query: 99 acagccaagccagaccca 116
| ||||||| |||||||
Sbjct: 29 tctgccaagctagaccca 12
>RF00779;MIR474;AARH01005447.1/11228-11352 3694:Populus
trichocarpa
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 4 ttgggtgctgctgggcagcaagacccaacgttgtt-gctccttttagaagtgttttgggc 62
|||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||||
Sbjct: 11 ttgggtgctgctgggcagcaggacccaacgttgttggctccttttaaaagtcttttgggc 70
>RF00779;MIR474;AARH01016781.1/2173-2035 3694:Populus trichocarpa
Length = 139
Score = 73.8 bits (37), Expect = 5e-13
Identities = 101/121 (83%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 1 ctattgggtgctgctgggcagcaagacccaacgttgttg-ctccttttagaagtgttttg 59
||||||||| ||||| ||| || |||||||||||| || |||||||| |||| |||||
Sbjct: 129 ctattgggtcttgctgagcaacatgacccaacgttggtggctccttttgaaagttttttg 70
Query: 60 ggcatgacttagcagccagacccaacagcgttgggtccaacagccaagccagacccaata 119
| | |||||| || ||||||||||||| | |||||| || | |||||||||| |||||||
Sbjct: 69 gacctgacttggctgccagacccaacaacattgggttcagctgccaagccagccccaata 10
Query: 120 g 120
|
Sbjct: 9 g 9
>RF00779;MIR474;AARH01019362.1/1679-1575 3694:Populus trichocarpa
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 12 tgctgggcagcaagacccaacgttgttg-ctccttttagaagtgttttgggcatgactta 70
||||||||| || ||| ||||||||||| ||| |||| |||||||||||||| ||| ||
Sbjct: 85 tgctgggcaacaggacacaacgttgttggctctttttggaagtgttttgggcctgagttg 26
Query: 71 gcagccagacccaaca 86
||||||||||||||||
Sbjct: 25 gcagccagacccaaca 10
>RF00779;MIR474;AC215623.1/34331-34249 3694:Populus trichocarpa
Length = 83
Score = 65.9 bits (33), Expect = 1e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 50 aagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagcc 109
||||||||||||| |||||| ||||| |||| ||||| ||||||||||| | ||||||||
Sbjct: 5 aagtgttttgggcttgacttggcagctagactcaacaacgttgggtccagctgccaagcc 64
Query: 110 a 110
|
Sbjct: 65 a 65
>RF00779;MIR474;AARH01003913.1/127593-127677 3694:Populus
trichocarpa
Length = 85
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
|||||||||||||| | ||| |||||||||| ||||||| ||||||||| | ||||||
Sbjct: 81 gaagtgttttgggcctagcttggcagccagactcaacagcattgggtccagctgccaagt 22
Query: 109 cagacccaa 117
|||||||||
Sbjct: 21 cagacccaa 13
>RF00779;MIR474;AARH01002460.1/28163-28080 3694:Populus trichocarpa
Length = 84
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
||||||||||||| |||||| |||||||||| || ||||||||||||| | ||||||
Sbjct: 4 gaagtgttttgggtctgacttggcagccagacttaatagcgttgggtccagctgccaagt 63
Query: 109 cagacccaatag 120
|||||||||||
Sbjct: 64 tagacccaatag 75
>RF00779;MIR474;AARH01010364.1/9503-9585 3694:Populus trichocarpa
Length = 83
Score = 63.9 bits (32), Expect = 4e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
||||||||||||| || ||| ||||||||||||||||||||||||| |||| |||||
Sbjct: 4 gaagtgttttgggtctggcttggcagccagacccaacagcgttgggt-taacaaccaagt 62
Query: 109 cagacccaatag 120
|||| |||||||
Sbjct: 63 cagatccaatag 74
>RF00779;MIR474;AARH01040803.1/584-669 3694:Populus trichocarpa
Length = 86
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 53 tgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagccaga 112
|||||||||| || ||| |||||||||||||||||||||||||| | || ||||| |||
Sbjct: 10 tgttttgggcttggcttgacagccagacccaacagcgttgggtcccatagtcaagctaga 69
Query: 113 cccaatag 120
|| |||||
Sbjct: 70 ccaaatag 77
>RF00779;MIR474;AC216472.1/35744-35660 3694:Populus trichocarpa
Length = 85
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
||||||||||||| || ||| ||||||| |||||||||||||||||||| || ||||||
Sbjct: 81 gaagtgttttgggtctggcttggcagccaaacccaacagcgttgggtccagcaaccaagc 22
>RF00779;MIR474;AARH01032507.1/694-574 3694:Populus trichocarpa
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctattgggtgctgctgggcagcaagacccaac-gttgttgctccttttagaagtgttttg 59
||||||||||||||||||||||| |||||||| | | ||||||||| |||||||||||
Sbjct: 8 ctattgggtgctgctgggcagcaggacccaactctactggctccttttggaagtgttttg 67
Query: 60 ggc 62
|||
Sbjct: 68 ggc 70
>RF00779;MIR474;AARH01010364.1/10181-10055 3694:Populus
trichocarpa
Length = 127
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttggg 94
||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 46 gaagtgttttgggtctggcttggcagccagacccaacagcgttggg 1
>RF00779;MIR474;AARH01010371.1/1364-1280 3694:Populus trichocarpa
Length = 85
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 79 acccaacagcgttgggtccaacagccaagccagacccaatag 120
|||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 51 acccaacagcgttgggtccagcaaccaagtcagacccaatag 10
>RF00779;MIR474;AARH01003143.1/434274-434190 3694:Populus
trichocarpa
Length = 85
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtcc 97
|||||||||| ||| || ||| ||||||| |||||||||||||||||||
Sbjct: 81 gaagtgttttaggcttggcttggcagccaaacccaacagcgttgggtcc 33
>RF00779;MIR474;AARH01003913.1/127879-127962 3694:Populus
trichocarpa
Length = 84
Score = 58.0 bits (29), Expect = 3e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
|||||||||||||| |||||||||||||| ||| || || ||||||| || | | ||||
Sbjct: 80 gaagtgttttgggcctgacttagcagccacaccaaatagtgttgggtgcagctgtcaagt 21
Query: 109 cagacccaa 117
|||||||||
Sbjct: 20 cagacccaa 12
>RF00779;MIR474;AC217585.1/92615-92693 3694:Populus trichocarpa
Length = 79
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtc 96
|||||||||||||| | ||||||| |||||||||||| |||||||||
Sbjct: 77 gaagtgttttgggcttagcttagcaaccagacccaacaacgttgggtc 30
>RF00779;MIR474;AARH01002460.1/28793-28659 3694:Populus trichocarpa
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 39 gctccttttagaagtgttttgggcatgacttagcagccagacc 81
|||| |||| |||||||||||||| |||||| |||||||||||
Sbjct: 78 gctcattttggaagtgttttgggcctgacttggcagccagacc 120
>RF00779;MIR474;AARH01016040.1/5962-6045 3694:Populus trichocarpa
Length = 84
Score = 54.0 bits (27), Expect = 4e-07
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
|||||||||||||| || ||| ||||| |||||||| ||||||||||| | |||||||
Sbjct: 80 gaagtgttttgggcctggcttgaaagccaaacccaacaacgttgggtccatctgccaagc 21
Query: 109 cag 111
|||
Sbjct: 20 cag 18
>RF00779;MIR474;AC216460.1/69168-69272 3694:Populus trichocarpa
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 44 ttttagaagtgttttgggcatgacttagcagccagacccaacagcgttgggtcc 97
|||| ||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct: 85 ttttggaagtgttttgggtctgacttgtcaatcagacccaacagcgttgggtcc 32
>RF00779;MIR474;AARH01022561.1/3145-3010 3694:Populus trichocarpa
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 39 gctccttttagaagtgttttgggcatgacttagcagccagacccaacagcgttgggtcca 98
|||| |||| |||||||||||||| |||| | || ||||||||||||| | || | ||||
Sbjct: 89 gctctttttggaagtgttttgggcctgacatggctgccagacccaacaacattagatcca 30
Query: 99 acagccaagccagacccaatag 120
| ||||||||| ||||||||
Sbjct: 29 gctgccaagccaaccccaatag 8
>RF00779;MIR474;AARH01003143.1/432803-432851 3694:Populus
trichocarpa
Length = 49
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ctattgggtgctgctgggcagcaagacccaacg 33
||||||||| |||||||||| ||||||||||||
Sbjct: 15 ctattgggttctgctgggcaacaagacccaacg 47
>RF00779;MIR474;AC215623.1/38790-38874 3694:Populus trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 55 ttttgggcatgacttagcagccagacccaacagcgttgggt 95
|||||||| |||||| | |||||||||||| ||||||||||
Sbjct: 75 ttttgggcctgacttggtagccagacccaatagcgttgggt 35
>RF00779;MIR474;AARH01004206.1/8671-8776 3694:Populus trichocarpa
Length = 106
Score = 50.1 bits (25), Expect = 7e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 44 ttttagaagtgttttgggcatgacttagcagccagacccaacagcgttgggtc 96
|||| ||||||||||||| |||||| || ||||||||||||||||| ||||
Sbjct: 54 ttttggaagtgttttgggtctgacttgtcaaccagacccaacagcgttaggtc 106
>RF00779;MIR474;AARH01007940.1/245-328 3694:Populus trichocarpa
Length = 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
|||||||||||||| || | | || |||| |||||||| | ||||||||| | |||||||
Sbjct: 4 gaagtgttttgggcctggcgtggctgccatacccaacaactttgggtccagctgccaagc 63
Query: 109 cagacccaatag 120
||| |||||||
Sbjct: 64 cagctccaatag 75
>RF00779;MIR474;AC184078.2/10769-10686 3694:Populus trichocarpa
Length = 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 49 gaagtgttttgggcatgacttagcagccagacccaacagcgttgggtccaacagccaagc 108
|||||||||||| | |||||| ||| |||||| || | |||||||||| | ||||||
Sbjct: 4 gaagtgttttggacctgacttggcaaccagacttaataatgttgggtccagctaccaagc 63
Query: 109 cagacccaatag 120
||||||||||||
Sbjct: 64 cagacccaatag 75
>RF00779;MIR474;AARH01010092.1/47645-47563 3694:Populus
trichocarpa
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 gggtgctgctgggcagcaagacccaacgttg 36
|||| |||||| |||||||||||||||||||
Sbjct: 13 gggtcctgctgcgcagcaagacccaacgttg 43
>RF00779;MIR474;AARH01001024.1/64218-64094 3694:Populus trichocarpa
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 85 cagcgttgggtccaacagccaagccagacccaata 119
||||||||||||| || ||||||||||| ||||||
Sbjct: 81 cagcgttgggtccgactgccaagccagatccaata 115
>RF00779;MIR474;AARH01025758.1/1706-1841 3694:Populus trichocarpa
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 71 gcagccagacccaacagcgttgggtccaacagccaagccagacccaatag 120
|||| |||||||||||| |||||||| | |||||| ||||||||||||
Sbjct: 57 gcagtcagacccaacagagttgggtcttgctgccaagtcagacccaatag 8
>RF00779;MIR474;AARH01002213.1/133262-133366 3694:Populus
trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 75 ccagacccaacagcgttgggtc 96
||||||||||||||||||||||
Sbjct: 54 ccagacccaacagcgttgggtc 33
>RF00779;MIR474;AARH01016064.1/1684-1788 3694:Populus trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 50 aagtgttttgggcatgacttagcagccagacccaacagcgttgggt 95
|||||||||||| |||||| || |||||||||||| ||||||||
Sbjct: 79 aagtgttttgggtctgacttgtcaaccagacccaacatcgttgggt 34
