miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54280_ptc-miRf12458-akr:pmrd
Length = 147
Score = 172 bits (87), Expect = 4e-44
Identities = 127/139 (91%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgt 62
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 4 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctatttctgagt 63
Query: 63 tcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatg 121
||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||| |
Sbjct: 64 gggcagcgactcagttttccttgactgtttatgagtcgacaggggcagtgtgggctgacg 123
Query: 122 aatccattcgtcacctctg 140
|||||||||||||||||||
Sbjct: 124 aatccattcgtcacctctg 142
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 cagtgtgggctgacgaatccattcgtcacctgtgaaagc 39
||||||||||||||||||||||||||||||| |||||||
Sbjct: 109 cagtgtgggctgacgaatccattcgtcacctctgaaagc 147
>54284_ptc-miRf12462-akr:pmrd
Length = 147
Score = 167 bits (84), Expect = 3e-42
Identities = 124/136 (91%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgt 62
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 4 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctatttctgagt 63
Query: 63 tcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatg 121
||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||| |
Sbjct: 64 gggcagcgactcagttttccttgactgtttatgagtcgacaggggcagtgtgggctgacg 123
Query: 122 aatccattcgtcacct 137
||||||||||||||||
Sbjct: 124 aatccattcgtcacct 139
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 cagtgtgggctgacgaatccattcgtcacctgtgaaagc 39
||||||||||||||||||||||||||||||| |||||||
Sbjct: 109 cagtgtgggctgacgaatccattcgtcacctatgaaagc 147
>53531_ptc-miRf11709-akr:pmrd
Length = 147
Score = 163 bits (82), Expect = 4e-41
Identities = 125/138 (90%), Gaps = 1/138 (0%)
Strand = Plus / Plus
Query: 1 cagtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctat 60
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2 cagtatgggctgacgaatccattcgtcacctctgaaagcagtttcgggggctttttctga 61
Query: 61 gttcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tga 119
|| ||| ||||||| |||||||||||||||||||||| | ||||||||||||| |||
Sbjct: 62 gtgggcagcgactcagttttccttgactgtttatgagtcaattggggctgtgtgggctga 121
Query: 120 tgaatccattcgtcacct 137
||||||||||||||||||
Sbjct: 122 tgaatccattcgtcacct 139
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagc 39
||||||||||| ||||||||||||||||| |||||||
Sbjct: 111 gtgtgggctgatgaatccattcgtcacctatgaaagc 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 121 gaatccattcgtcacctctg 140
||||||||||||||||||||
Sbjct: 16 gaatccattcgtcacctctg 35
>54282_ptc-miRf12460-akr:pmrd
Length = 136
Score = 155 bits (78), Expect = 1e-38
Identities = 121/134 (90%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 5 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgttc 64
||||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcactttcggggcctatttctcagtgg 60
Query: 65 gcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatgaa 123
||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 61 gcagcgactcagttttccttgactgtttatgagtacacaggggctgtgtgggttgacgaa 120
Query: 124 tccattcgtcacct 137
| ||||||||||||
Sbjct: 121 ttcattcgtcacct 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacct 31
||||||| |||||||| ||||||||||||
Sbjct: 106 gtgtgggttgacgaattcattcgtcacct 134
>52605_ptc-miRf10783-akr:pmrd
Length = 140
Score = 149 bits (75), Expect = 6e-37
Identities = 121/135 (89%), Gaps = 1/135 (0%)
Strand = Plus / Plus
Query: 4 tgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgtt 63
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
Query: 64 cgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatga 122
||| ||||||| |||||||||||||||||||||| || | ||||||||||| ||| ||
Sbjct: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
Query: 123 atccattcgtcacct 137
|||||||||||||||
Sbjct: 122 atccattcgtcacct 136
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtga 35
|||||||||||||||||||||||||||||||||
Sbjct: 108 gtgtgggctgacgaatccattcgtcacctgtga 140
>54281_ptc-miRf12459-akr:pmrd
Length = 147
Score = 147 bits (74), Expect = 3e-36
Identities = 120/134 (89%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 5 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgttc 64
||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||
Sbjct: 6 gtgggctgacgaatccattcgtcacctatgaaagcagtttcaggggctatttctgagttg 65
Query: 65 gcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatgaa 123
| | ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||| |||
Sbjct: 66 gtagcgactcagttttccgtgactatttatgagtacacaggggctgtgtgggttgacgaa 125
Query: 124 tccattcgtcacct 137
|||||| |||||||
Sbjct: 126 tccattggtcacct 139
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagc 39
||||||| ||||||||||||| ||||||| |||||||
Sbjct: 111 gtgtgggttgacgaatccattggtcacctatgaaagc 147
>54285_ptc-miRf12463-akr:pmrd
Length = 147
Score = 143 bits (72), Expect = 4e-35
Identities = 121/136 (88%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgt 62
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct: 4 gtgtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagt 63
Query: 63 tcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatg 121
||| ||||||| |||||||||||||||||||||| |||||||||| ||||| ||| |
Sbjct: 64 gggcagcgactcagttttccttgactgtttatgagtcgacaggggctgcgtgggctgacg 123
Query: 122 aatccattcgtcacct 137
||||||||||| ||||
Sbjct: 124 aatccattcgtaacct 139
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 5 gtgggctgacgaatccattcgtcacctgtgaaagc 39
|||||||||||||||||||||| ||||||||||||
Sbjct: 113 gtgggctgacgaatccattcgtaacctgtgaaagc 147
>54278_ptc-miRf12456-akr:pmrd
Length = 144
Score = 143 bits (72), Expect = 4e-35
Identities = 124/136 (91%), Gaps = 4/136 (2%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgt 62
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct: 4 gtgtgggctgacgaatccattcgtcacctatgaaagcagtttcgggg-ctatttctgagt 62
Query: 63 tcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatg 121
||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 63 g-gcagcgactcagttttccttgactgtttatgagt-cacaggggctgtgtgggctgacg 120
Query: 122 aatccattcgtcacct 137
||||||||||||||||
Sbjct: 121 aatccattcgtcacct 136
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagc 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 108 gtgtgggctgacgaatccattcgtcacctgtgaaagc 144
>54277_ptc-miRf12455-akr:pmrd
Length = 144
Score = 143 bits (72), Expect = 4e-35
Identities = 124/136 (91%), Gaps = 4/136 (2%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgt 62
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct: 4 gtgtgggctgacgaatccattcgtcacctatgaaagcagtttcgggg-ctatttctgagt 62
Query: 63 tcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatg 121
||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 63 g-gcagcgactcagttttccttgactgtttatgagt-cacaggggctgtgtgggctgacg 120
Query: 122 aatccattcgtcacct 137
||||||||||||||||
Sbjct: 121 aatccattcgtcacct 136
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagc 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 108 gtgtgggctgacgaatccattcgtcacctgtgaaagc 144
>54286_ptc-miRf12464-akr:pmrd
Length = 135
Score = 139 bits (70), Expect = 6e-34
Identities = 120/134 (89%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 5 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgttc 64
||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
Query: 65 gcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatgaa 123
||| ||||||| |||||||||| ||||||||||| |||||||||||||||| ||| |||
Sbjct: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
Query: 124 tccattcgtcacct 137
||||||||||||||
Sbjct: 120 tccattcgtcacct 133
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacct 31
|||||||||||||||||||||||||||||
Sbjct: 105 gtgtgggctgacgaatccattcgtcacct 133
>52632_ptc-miRf10810-akr:pmrd
Length = 135
Score = 139 bits (70), Expect = 6e-34
Identities = 120/134 (89%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 5 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgttc 64
||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
Query: 65 gcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatgaa 123
||| ||||||| |||||||||| ||||||||||| |||||||||||||||| ||| |||
Sbjct: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
Query: 124 tccattcgtcacct 137
||||||||||||||
Sbjct: 120 tccattcgtcacct 133
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacct 31
|||||||||||||||||||||||||||||
Sbjct: 105 gtgtgggctgacgaatccattcgtcacct 133
>54279_ptc-miRf12457-akr:pmrd
Length = 152
Score = 127 bits (64), Expect = 2e-30
Identities = 119/136 (87%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgt 62
||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||
Sbjct: 5 gtgtgggctgacgaatccattcgtcacctctgaaagctgtttcgggggctatttcttagt 64
Query: 63 tcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatg 121
|| ||||||| ||||||||||||| ||| |||| || |||||| ||||||| ||| |
Sbjct: 65 gggcggcgactcagttttccttgactggttaagagtccataggggcagtgtgggctgacg 124
Query: 122 aatccattcgtcacct 137
||||||||||||||||
Sbjct: 125 aatccattcgtcacct 140
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 1 cagtgtgggctgacgaatccattcgtcacctgtgaaagcagtt 43
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 110 cagtgtgggctgacgaatccattcgtcacctatgaaagcagtt 152
Score = 48.1 bits (24), Expect = 2e-06
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 106 ggctgtgtggg-tgatgaatccattcgtcacctctg 140
||||||||||| ||| ||||||||||||||||||||
Sbjct: 1 ggctgtgtgggctgacgaatccattcgtcacctctg 36
>53591_ptc-miRf11769-akr:pmrd
Length = 146
Score = 103 bits (52), Expect = 3e-23
Identities = 117/136 (86%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgt 62
|||||||||||||||||||||||||||||||||||||| |||| || ||| ||| | ||
Sbjct: 4 gtgtgggctgacgaatccattcgtcacctgtgaaagcactttcaggcgctatttgtgagt 63
Query: 63 tcgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatg 121
||| || |||| |||||||||||||||||||||| ||||||||||| ||| ||| |
Sbjct: 64 gggcagcgtctcagttttccttgactgtttatgagtcaccaggggctgtgggggttgacg 123
Query: 122 aatccattcgtcacct 137
||| ||||||||||||
Sbjct: 124 aat-cattcgtcacct 138
>54283_ptc-miRf12461-akr:pmrd
Length = 137
Score = 91.7 bits (46), Expect = 1e-19
Identities = 114/134 (85%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 5 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgttc 64
||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct: 2 gtgggctaacgaatccattcgtcacctatgaaagcagtttc-ggggctttttcttagtgg 60
Query: 65 gcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatgaa 123
||| ||||| | |||||| | || |||||||||| |||| ||||||||||| ||| |||
Sbjct: 61 gcagcgacttagttttccctaacagtttatgagtcaacagaggctgtgtgggctgacgaa 120
Query: 124 tccattcgtcacct 137
| ||||||| ||||
Sbjct: 121 tacattcgtaacct 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtg 34
|||||||||||||||| ||||||| |||||||
Sbjct: 106 gtgtgggctgacgaatacattcgtaacctgtg 137
>52128_ptc-miRf10306-akr:pmrd
Length = 142
Score = 79.8 bits (40), Expect = 5e-16
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 3 gtgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttct 58
|||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct: 81 gtgttggctgacgaatccattcgtcacctctgaaagcagtttcgggagctgtttct 136
Score = 65.9 bits (33), Expect = 7e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 69 cgactcaattttccttgactgtttatgagtacacaggggctgtg-tgggtgatgaatcca 127
||||||| |||||||||||||||||||||| | | ||||||| ||| ||| |||||||
Sbjct: 40 cgactcagttttccttgactgtttatgagttaattgtggctgtgttggctgacgaatcca 99
Query: 128 ttcgtcacctctg 140
|||||||||||||
Sbjct: 100 ttcgtcacctctg 112
>54242_ptc-miRf12420-akr:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 6 tgggctgacgaatccattcgtcacctgtgaaagcagtt 43
||||||| |||||||| ||||||| ||||||||||||
Sbjct: 23 tgggctgtggaatccatgcgtcacccgtgaaagcagtt 60
>54241_ptc-miRf12419-akr:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 6 tgggctgacgaatccattcgtcacctgtgaaagcagtt 43
||||||| |||||||| ||||||| ||||||||||||
Sbjct: 18 tgggctgtggaatccatgcgtcacccgtgaaagcagtt 55
>52095_ptc-miRf10273-akr:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 9 gctgacgaatccattcgtcacctgtgaaagcagtttcg 46
|||| ||||||||||||||||| ||| |||| ||||||
Sbjct: 66 gctgtcgaatccattcgtcaccagtggaagctgtttcg 103
