miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54102_ptc-miRf12280-akr:pmrd
Length = 189
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 112
Query: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 52
Query: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
|||||||||||||||||||||||||||||||||
Sbjct: 51 tatgtgatgcgaacctcatgatcacgtggtcac 19
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
|||||||| |||||| |||||||||||||
Sbjct: 19 gtgaccacgtgatcatgaggttcgcatca 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| |||||| ||||||||
Sbjct: 143 tgatgcgaacctcgtgatcatgtggtcac 171
>54101_ptc-miRf12279-akr:pmrd
Length = 189
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 112
Query: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 52
Query: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
|||||||||||||||||||||||||||||||||
Sbjct: 51 tatgtgatgcgaacctcatgatcacgtggtcac 19
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
|||||||| |||||| |||||||||||||
Sbjct: 19 gtgaccacgtgatcatgaggttcgcatca 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| |||||| ||||||||
Sbjct: 143 tgatgcgaacctcgtgatcatgtggtcac 171
>53312_ptc-miRf11490-akr:pmrd
Length = 153
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
Query: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
Query: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
|||||||||||||||||||||||||||||||||
Sbjct: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| |||||| ||||||||
Sbjct: 29 tgatgcgaacctcgtgatcatgtggtcac 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
|||||||| |||||| |||||||||||||
Sbjct: 153 gtgaccacgtgatcatgaggttcgcatca 125
>53311_ptc-miRf11489-akr:pmrd
Length = 169
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 68
Query: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 128
Query: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
|||||||||||||||||||||||||||||||||
Sbjct: 129 tatgtgatgcgaacctcatgatcacgtggtcac 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| |||||| ||||||||
Sbjct: 37 tgatgcgaacctcgtgatcatgtggtcac 9
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
|||||||| |||||| |||||||||||||
Sbjct: 161 gtgaccacgtgatcatgaggttcgcatca 133
>53309_ptc-miRf11487-akr:pmrd
Length = 169
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 68
Query: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 128
Query: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
|||||||||||||||||||||||||||||||||
Sbjct: 129 tatgtgatgcgaacctcatgatcacgtggtcac 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| |||||| ||||||||
Sbjct: 37 tgatgcgaacctcgtgatcatgtggtcac 9
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
|||||||| |||||| |||||||||||||
Sbjct: 161 gtgaccacgtgatcatgaggttcgcatca 133
>54136_ptc-miRf12314-akr:pmrd
Length = 151
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
|||||||| ||||||||||||||||||||
Sbjct: 18 gtgaccacgtgatcacgaggttcgcatca 46
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| |||||||||||||||
Sbjct: 46 tgatgcgaacctcgtgatcacgtggtcac 18
>53197_ptc-miRf11375-akr:pmrd
Length = 151
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
|||||||| ||||||||||||||||||||
Sbjct: 18 gtgaccacgtgatcacgaggttcgcatca 46
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| |||||||||||||||
Sbjct: 46 tgatgcgaacctcgtgatcacgtggtcac 18
>52545_ptc-miRf10723-akr:pmrd
Length = 150
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 129 gcgaacctcatgatcacgtggtcac 153
|||||||||||||||||||||||||
Sbjct: 27 gcgaacctcatgatcacgtggtcac 3
>54193_ptc-miRf12371-akr:pmrd
Length = 184
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 118 gcatatgtgatgcgaacctcatgatcacgtggtcac 153
|||||| ||||||||||||| ||||||| |||||||
Sbjct: 130 gcatatttgatgcgaacctcgtgatcacatggtcac 165
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
||||||| ||||||||||||||||||||
Sbjct: 165 gtgaccatgtgatcacgaggttcgcatca 137
>53417_ptc-miRf11595-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 118 gcatatgtgatgcgaacctcatgatcacgtggtcac 153
|||||| ||||||||||||| ||||||| |||||||
Sbjct: 45 gcatatttgatgcgaacctcgtgatcacatggtcac 10
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
||||||| ||||||||||||||||||||
Sbjct: 10 gtgaccatgtgatcacgaggttcgcatca 38
>53347_ptc-miRf11525-akr:pmrd
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgaccacatgatcacgaggttcgcatca 29
||||||| ||||||||||||||||||||
Sbjct: 3 gtgaccaagtgatcacgaggttcgcatca 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 125 tgatgcgaacctcatgatcacgtggtcac 153
||||||||||||| ||||||| |||||||
Sbjct: 31 tgatgcgaacctcgtgatcacttggtcac 3
>52592_ptc-miRf10770-akr:pmrd
Length = 171
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 124 gtgatgcgaacctcatgatcacgtggtca 152
|||||||||||||| ||||||| ||||||
Sbjct: 29 gtgatgcgaacctcgtgatcacatggtca 1
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tgatcacgaggttcgcatca 29
||||||||||||||||||||
Sbjct: 9 tgatcacgaggttcgcatca 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 122 atgtgatgcgaacctcatgatcac 145
|||||||||||||||| |||||||
Sbjct: 141 atgtgatgcgaacctcgtgatcac 164
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 10 tgatcacgaggttcgcatca 29
||||||||||||||||||||
Sbjct: 163 tgatcacgaggttcgcatca 144
>53463_ptc-miRf11641-akr:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 125 tgatgcgaacctcatgatcacgtg 148
||||||||||||||| ||||||||
Sbjct: 29 tgatgcgaacctcataatcacgtg 6
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 125 tgatgcgaacctcatgatcacgtggtca 152
||||||| ||||| ||||||||||||||
Sbjct: 141 tgatgcggacctcgtgatcacgtggtca 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 2 tgaccacatgatcacgaggttcgcatca 29
||||||| |||||||||||| |||||||
Sbjct: 168 tgaccacgtgatcacgaggtccgcatca 141
