miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54102_ptc-miRf12280-akr:pmrd
Length = 189
Score = 335 bits (169), Expect = 6e-93
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 1 tgggttttgtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgggttttgtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggt 120
Query: 61 atttgtttaaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atttgtttaaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtat 60
Query: 121 gtgaagcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gtgaagcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 11
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
|||||||| |||||| |||||||||||||
Sbjct: 19 gtgaccacgtgatcatgaggttcgcatca 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 133 tgatgcgaacctcatgatcacgtggtcac 161
||||||||||||| |||||| ||||||||
Sbjct: 143 tgatgcgaacctcgtgatcatgtggtcac 171
>54101_ptc-miRf12279-akr:pmrd
Length = 189
Score = 335 bits (169), Expect = 6e-93
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 1 tgggttttgtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgggttttgtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggt 120
Query: 61 atttgtttaaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atttgtttaaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtat 60
Query: 121 gtgaagcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gtgaagcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 11
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
|||||||| |||||| |||||||||||||
Sbjct: 19 gtgaccacgtgatcatgaggttcgcatca 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 133 tgatgcgaacctcatgatcacgtggtcac 161
||||||||||||| |||||| ||||||||
Sbjct: 143 tgatgcgaacctcgtgatcatgtggtcac 171
>53309_ptc-miRf11487-akr:pmrd
Length = 169
Score = 335 bits (169), Expect = 6e-93
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 1 tgggttttgtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggttttgtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggt 60
Query: 61 atttgtttaaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttgtttaaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtat 120
Query: 121 gtgaagcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgaagcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 169
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcac 161
||||||||||||| |||||| ||||||||
Sbjct: 37 tgatgcgaacctcgtgatcatgtggtcac 9
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
|||||||| |||||| |||||||||||||
Sbjct: 161 gtgaccacgtgatcatgaggttcgcatca 133
>53312_ptc-miRf11490-akr:pmrd
Length = 153
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 9 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
Query: 69 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
Query: 129 tatgtgatgcgaacctcatgatcacgtggtcac 161
|||||||||||||||||||||||||||||||||
Sbjct: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcac 161
||||||||||||| |||||| ||||||||
Sbjct: 29 tgatgcgaacctcgtgatcatgtggtcac 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
|||||||| |||||| |||||||||||||
Sbjct: 153 gtgaccacgtgatcatgaggttcgcatca 125
>53310_ptc-miRf11488-akr:pmrd
Length = 153
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 9 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaccacatgatcacgaggttcgcatcataagttctatagactttatgggtatttgttt 60
Query: 69 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagagaatcatttgtgtgttctattaagttctatgcgtgaattgattgtatgtgaagca 120
Query: 129 tatgtgatgcgaacctcatgatcacgtggtcac 161
|||||||||||||||||||||||||||||||||
Sbjct: 121 tatgtgatgcgaacctcatgatcacgtggtcac 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcac 161
||||||||||||| |||||| ||||||||
Sbjct: 29 tgatgcgaacctcgtgatcatgtggtcac 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
|||||||| |||||| |||||||||||||
Sbjct: 153 gtgaccacgtgatcatgaggttcgcatca 125
>54136_ptc-miRf12314-akr:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcacccaaccca 169
||||||||||||| ||||||||||||||| |||||||
Sbjct: 46 tgatgcgaacctcgtgatcacgtggtcacgcaaccca 10
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
|||||||| ||||||||||||||||||||
Sbjct: 18 gtgaccacgtgatcacgaggttcgcatca 46
>53197_ptc-miRf11375-akr:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcacccaaccca 169
||||||||||||| ||||||||||||||| |||||||
Sbjct: 46 tgatgcgaacctcgtgatcacgtggtcacgcaaccca 10
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
|||||||| ||||||||||||||||||||
Sbjct: 18 gtgaccacgtgatcacgaggttcgcatca 46
>54193_ptc-miRf12371-akr:pmrd
Length = 184
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 126 gcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 169
|||||| ||||||||||||| ||||||| ||||||| |||||||
Sbjct: 130 gcatatttgatgcgaacctcgtgatcacatggtcacgcaaccca 173
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
||||||| ||||||||||||||||||||
Sbjct: 165 gtgaccatgtgatcacgaggttcgcatca 137
>53417_ptc-miRf11595-akr:pmrd
Length = 164
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 126 gcatatgtgatgcgaacctcatgatcacgtggtcacccaaccca 169
|||||| ||||||||||||| ||||||| ||||||| |||||||
Sbjct: 45 gcatatttgatgcgaacctcgtgatcacatggtcacgcaaccca 2
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtgaccacatgatcacgaggttcgcatca 37
||||||| ||||||||||||||||||||
Sbjct: 10 gtgaccatgtgatcacgaggttcgcatca 38
>52545_ptc-miRf10723-akr:pmrd
Length = 150
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 137 gcgaacctcatgatcacgtggtcac 161
|||||||||||||||||||||||||
Sbjct: 27 gcgaacctcatgatcacgtggtcac 3
>54233_ptc-miRf12411-akr:pmrd
Length = 169
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 132 gtgatgcgaacctcatgatcacgtggtcacccaaccca 169
|||||| |||||| ||||||||||||||| |||||||
Sbjct: 102 gtgatgtgaaccttgtgatcacgtggtcacgcaaccca 65
>53347_ptc-miRf11525-akr:pmrd
Length = 186
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 tgtgaccacatgatcacgaggttcgcatca 37
|||||||| ||||||||||||||||||||
Sbjct: 2 tgtgaccaagtgatcacgaggttcgcatca 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcac 161
||||||||||||| ||||||| |||||||
Sbjct: 31 tgatgcgaacctcgtgatcacttggtcac 3
>53921_ptc-miRf12099-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcacccaaccca 169
|||||||||||| ||||||| ||||||| |||||||
Sbjct: 98 tgatgcgaaccttgtgatcacatggtcacgcaaccca 62
>52592_ptc-miRf10770-akr:pmrd
Length = 171
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 132 gtgatgcgaacctcatgatcacgtggtca 160
|||||||||||||| ||||||| ||||||
Sbjct: 29 gtgatgcgaacctcgtgatcacatggtca 1
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 tgatcacgaggttcgcatca 37
||||||||||||||||||||
Sbjct: 9 tgatcacgaggttcgcatca 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 130 atgtgatgcgaacctcatgatcac 153
|||||||||||||||| |||||||
Sbjct: 141 atgtgatgcgaacctcgtgatcac 164
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18 tgatcacgaggttcgcatca 37
||||||||||||||||||||
Sbjct: 163 tgatcacgaggttcgcatca 144
>52544_ptc-miRf10722-akr:pmrd
Length = 156
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtggtcacccaaccca 169
||||||||| ||| |||||||||||| || |||||||
Sbjct: 66 tgatgcgaatctcgtgatcacgtggttacgcaaccca 30
>53463_ptc-miRf11641-akr:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 133 tgatgcgaacctcatgatcacgtg 156
||||||||||||||| ||||||||
Sbjct: 29 tgatgcgaacctcataatcacgtg 6
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 133 tgatgcgaacctcatgatcacgtggtca 160
||||||| ||||| ||||||||||||||
Sbjct: 141 tgatgcggacctcgtgatcacgtggtca 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 10 tgaccacatgatcacgaggttcgcatca 37
||||||| |||||||||||| |||||||
Sbjct: 168 tgaccacgtgatcacgaggtccgcatca 141
