miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54103_ptc-miRf12281-akr:pmrd
Length = 119
Score = 224 bits (113), Expect = 1e-59
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1 agtggaccttatataagtccacctaaggggggtcagttagggtttctttaaatgactcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agtggaccttatataagtccacctaaggggggtcagttagggtttctttaaatgactcta 57
Query: 61 aacttatataaaccctaagggacccccttaggtggacttatataagacccact 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 aacttatataaaccctaagggacccccttaggtggacttatataagacccact 4
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cttatataagtccacctaaggggg 31
||||||||||||||||||||||||
Sbjct: 11 cttatataagtccacctaaggggg 34
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 cccccttaggtggacttatataag 106
||||||||||||||||||||||||
Sbjct: 86 cccccttaggtggacttatataag 109
>54225_ptc-miRf12403-akr:pmrd
Length = 113
Score = 216 bits (109), Expect = 3e-57
Identities = 112/113 (99%)
Strand = Plus / Plus
Query: 1 agtggaccttatataagtccacctaaggggggtcagttagggtttctttaaatgactcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtggaccttatataagtccacctaaggggggtcagttagggtttctttaaatgactcta 60
Query: 61 aacttatataaaccctaagggacccccttaggtggacttatataagacccact 113
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacttatattaaccctaagggacccccttaggtggacttatataagacccact 113
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 83 cccccttaggtggacttatataag 106
||||||||||||||||||||||||
Sbjct: 31 cccccttaggtggacttatataag 8
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 cttatataagtccacctaaggggg 31
||||||||||||||||||||||||
Sbjct: 106 cttatataagtccacctaaggggg 83
>53458_ptc-miRf11636-akr:pmrd
Length = 111
Score = 212 bits (107), Expect = 4e-56
Identities = 110/111 (99%)
Strand = Plus / Minus
Query: 2 gtggaccttatataagtccacctaaggggggtcagttagggtttctttaaatgactctaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtggaccttatataagtccacctaaggggggtcagttagggtttctttaaatgactctaa 52
Query: 62 acttatataaaccctaagggacccccttaggtggacttatataagacccac 112
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 acttatattaaccctaagggacccccttaggtggacttatataagacccac 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cttatataagtccacctaaggggg 31
||||||||||||||||||||||||
Sbjct: 7 cttatataagtccacctaaggggg 30
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 cccccttaggtggacttatataag 106
||||||||||||||||||||||||
Sbjct: 82 cccccttaggtggacttatataag 105
>52610_ptc-miRf10788-akr:pmrd
Length = 83
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 16 agtccacctaaggggggtcagttagggtttctttaaatgactctaaacttatataaaccc 75
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 agtccacctaaggggggtcagttagggtttctttaaatgactctaaacttatattaaccc 60
Query: 76 taagggacccccttaggtggact 98
|||||||||||||||||||||||
Sbjct: 61 taagggacccccttaggtggact 83
>53314_ptc-miRf11492-akr:pmrd
Length = 108
Score = 139 bits (70), Expect = 5e-34
Identities = 89/94 (94%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 11 atataagtccacctaaggggggtcagttagggtttctttaaatgactctaaacttatata 70
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct: 101 atataagtccacctaaggggggtctgttagggtttctttaaacgactctaaacttaaata 42
Query: 71 aaccctaagggacc-cccttaggtggacttatat 103
|||||||| ||||| |||||||||||||||||||
Sbjct: 41 aaccctaatggacctcccttaggtggacttatat 8
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 11 atataagtccacctaaggggggtcagttagggtttctttaa 51
||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 8 atataagtccacctaagggaggtccattagggtttatttaa 48
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 cccccttaggtggacttatat 103
|||||||||||||||||||||
Sbjct: 81 cccccttaggtggacttatat 101
