miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54103_ptc-miRf12281-akr:pmrd
Length = 119
Score = 139 bits (70), Expect = 5e-34
Identities = 89/94 (94%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaagtttagagtcgtttaaaga 67
||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||
Sbjct: 14 atataagtccacctaaggg-ggtcccttagggtttatataagtttagagtcatttaaaga 72
Query: 68 aaccctaacagaccccccttaggtggacttatat 101
||||||||| ||||||||||||||||||||||||
Sbjct: 73 aaccctaactgaccccccttaggtggacttatat 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaa 48
||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 106 atataagtccacctaaggggggtcagttagggtttctttaa 66
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 81 cccccttaggtggacttatat 101
|||||||||||||||||||||
Sbjct: 34 cccccttaggtggacttatat 14
>53313_ptc-miRf11491-akr:pmrd
Length = 113
Score = 139 bits (70), Expect = 5e-34
Identities = 89/94 (94%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaagtttagagtcgtttaaaga 67
||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||
Sbjct: 103 atataagtccacctaaggg-ggtcccttagggtttatataagtttagagtcatttaaaga 45
Query: 68 aaccctaacagaccccccttaggtggacttatat 101
||||||||| ||||||||||||||||||||||||
Sbjct: 44 aaccctaactgaccccccttaggtggacttatat 11
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaa 48
||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 11 atataagtccacctaaggggggtcagttagggtttctttaa 51
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 cccccttaggtggacttatat 101
|||||||||||||||||||||
Sbjct: 83 cccccttaggtggacttatat 103
>54225_ptc-miRf12403-akr:pmrd
Length = 113
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaagtttagagtcgtttaaaga 67
||||||||||||||||||| ||||| |||||||| || ||||||||||||| ||||||||
Sbjct: 103 atataagtccacctaaggg-ggtcccttagggttaatataagtttagagtcatttaaaga 45
Query: 68 aaccctaacagaccccccttaggtggacttatat 101
||||||||| ||||||||||||||||||||||||
Sbjct: 44 aaccctaactgaccccccttaggtggacttatat 11
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaa 48
||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 11 atataagtccacctaaggggggtcagttagggtttctttaa 51
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 cccccttaggtggacttatat 101
|||||||||||||||||||||
Sbjct: 83 cccccttaggtggacttatat 103
>53458_ptc-miRf11636-akr:pmrd
Length = 111
Score = 131 bits (66), Expect = 1e-31
Identities = 88/94 (93%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaagtttagagtcgtttaaaga 67
||||||||||||||||||| ||||| |||||||| || ||||||||||||| ||||||||
Sbjct: 10 atataagtccacctaaggg-ggtcccttagggttaatataagtttagagtcatttaaaga 68
Query: 68 aaccctaacagaccccccttaggtggacttatat 101
||||||||| ||||||||||||||||||||||||
Sbjct: 69 aaccctaactgaccccccttaggtggacttatat 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 8 atataagtccacctaagggaggtccattagggtttatttaa 48
||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 102 atataagtccacctaaggggggtcagttagggtttctttaa 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 81 cccccttaggtggacttatat 101
|||||||||||||||||||||
Sbjct: 30 cccccttaggtggacttatat 10
>52610_ptc-miRf10788-akr:pmrd
Length = 83
Score = 111 bits (56), Expect = 1e-25
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 13 agtccacctaagggaggtccattagggtttatttaagtttagagtcgtttaaagaaaccc 72
|||||||||||||| ||||| |||||||| || ||||||||||||| |||||||||||||
Sbjct: 83 agtccacctaaggg-ggtcccttagggttaatataagtttagagtcatttaaagaaaccc 25
Query: 73 taacagaccccccttaggtggact 96
|||| |||||||||||||||||||
Sbjct: 24 taactgaccccccttaggtggact 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 13 agtccacctaagggaggtccattagggtttatttaa 48
|||||||||||||| |||| ||||||||| |||||
Sbjct: 1 agtccacctaaggggggtcagttagggtttctttaa 36
