miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52536_ptc-miRf10714-akr:pmrd
Length = 141
Score = 280 bits (141), Expect = 3e-76
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 1 gtccacctccatgttggacctggatgcatccaactccatgtcggacctgcgtttgcgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtccacctccatgttggacctggatgcatccaactccatgtcggacctgcgtttgcgtcc 82
Query: 61 atccccacgttgggcctgacagcgaccgcgtccacctccatgttggacctggatgcatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 atccccacgttgggcctgacagcgaccgcgtccacctccatgttggacctggatgcatcc 22
Query: 121 aactccatgtcggacctagac 141
|||||||||||||||||||||
Sbjct: 21 aactccatgtcggacctagac 1
>52537_ptc-miRf10715-akr:pmrd
Length = 127
Score = 252 bits (127), Expect = 6e-68
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 8 tccatgttggacctggatgcatccaactccatgtcggacctgcgtttgcgtccatcccca 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tccatgttggacctggatgcatccaactccatgtcggacctgcgtttgcgtccatcccca 68
Query: 68 cgttgggcctgacagcgaccgcgtccacctccatgttggacctggatgcatccaactcca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cgttgggcctgacagcgaccgcgtccacctccatgttggacctggatgcatccaactcca 8
Query: 128 tgtcgga 134
|||||||
Sbjct: 7 tgtcgga 1
Score = 89.7 bits (45), Expect = 5e-19
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1 gtccacctccatgttggacctggatgcatccaactccatgtcgga 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gtccacctccatgttggacctggatgcatccaactccatgtcgga 1
Score = 81.8 bits (41), Expect = 1e-16
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 97 tccatgttggacctggatgcatccaactccatgtcggacct 137
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tccatgttggacctggatgcatccaactccatgtcggacct 87
>52859_ptc-miRf11037-akr:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 82 gcgaccgcgtccacctccatgttggacc 109
||||||||||||||||||||||||||||
Sbjct: 37 gcgaccgcgtccacctccatgttggacc 64
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gtccacctccatgttggacc 20
||||||||||||||||||||
Sbjct: 45 gtccacctccatgttggacc 64
>52279_ptc-miRf10457-akr:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gtccacctccatgttggacctggatgcat 29
||||||||||||||||||||| |||||||
Sbjct: 39 gtccacctccatgttggacctagatgcat 67
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 90 gtccacctccatgttggacctggatgcat 118
||||||||||||||||||||| |||||||
Sbjct: 39 gtccacctccatgttggacctagatgcat 67
>52764_ptc-miRf10942-akr:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 64 cccacgttgggcctgacagcgaccgcgtccacctccatgttggacctgga 113
||||||||||||||| |||| ||| ||| ||||||||||||||||||
Sbjct: 40 cccacgttgggcctggatgcgatagcgaccaactccatgttggacctgga 89
>51865_ptc-miRf10043-akr:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 64 cccacgttgggcctgacagcgaccgcgtccacctccatgttggacctgga 113
||||||||||||||| |||| ||| ||| ||||||||||||||||||
Sbjct: 36 cccacgttgggcctggatgcgatagcgaccaactccatgttggacctgga 85
>51864_ptc-miRf10042-akr:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 64 cccacgttgggcctgacagcgaccgcgtccacctccatgttggacctgga 113
||||||||||||||| |||| ||| ||| ||||||||||||||||||
Sbjct: 34 cccacgttgggcctggatgcgatagcgaccaactccatgttggacctgga 83
>52824_ptc-miRf11002-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 85 accgcgtccacctccatgttggacctgga 113
||||||||||||| |||||||| ||||||
Sbjct: 50 accgcgtccaccttcatgttgggcctgga 78
>52654_ptc-miRf10832-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 82 gcgaccgcgtccacctccatgttggacctggat 114
||||||||||||| ||||| ||||| |||||||
Sbjct: 39 gcgaccgcgtccaactccaggttgggcctggat 7
