miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51807_ptc-miR530b:pmrd
Length = 172
Score = 301 bits (152), Expect = 8e-83
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttgactccacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttgactccacaaac 71
Query: 61 aaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaactaataagctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaactaataagctta 131
Query: 121 gttgaggtgcaggtgcaagtgcaggtgaatgc 152
||||||||||||||||||||||||||||||||
Sbjct: 132 gttgaggtgcaggtgcaagtgcaggtgaatgc 163
>52848_ptc-miRf11026-akr:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 122 ttgaggtgcaggtgcaagtgcaggtgaatgc 152
|||||||||||||||| ||||||||||||||
Sbjct: 94 ttgaggtgcaggtgcaggtgcaggtgaatgc 124
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgca 25
|||||||||||||||||||||||||
Sbjct: 1 gcctttatctgcatttgcacctgca 25
>52847_ptc-miRf11025-akr:pmrd
Length = 138
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 122 ttgaggtgcaggtgcaagtgcaggtgaatgc 152
|||||||||||||||| ||||||||||||||
Sbjct: 102 ttgaggtgcaggtgcaggtgcaggtgaatgc 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgca 25
|||||||||||||||||||||||||
Sbjct: 9 gcctttatctgcatttgcacctgca 33
>51806_ptc-miR530a:pmrd
Length = 144
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 122 ttgaggtgcaggtgcaagtgcaggtgaatgc 152
|||||||||||||||| ||||||||||||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgc 135
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctttatctgcatttgcacctgca 25
|||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgca 36
>51904_ptc-miRf10082-akr:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 122 ttgaggtgcaggtgcaagtgcaggtgaa 149
|||||||||||||||| |||||||||||
Sbjct: 91 ttgaggtgcaggtgcaggtgcaggtgaa 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tttatctgcatttgcacctgca 25
||||||||||||||||||||||
Sbjct: 1 tttatctgcatttgcacctgca 22
>46904_aqc-miR530:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tctgcatttgcacctgcatct 28
|||||||||||||||||||||
Sbjct: 10 tctgcatttgcacctgcatct 30
