miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54289_ptc-miRf12467-akr:pmrd
Length = 158
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 81 gcaccatgtctccactgttctgctacgtgaacagt 115
||||||||||||||||||||||| |||||||||||
Sbjct: 109 gcaccatgtctccactgttctgcaacgtgaacagt 143
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3 tgttcacgttgaagaacagtggagacatggt 33
||||||||||| |||||||||||||||||||
Sbjct: 141 tgttcacgttgcagaacagtggagacatggt 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 90 ctccactgttctgctacgtgaacagt 115
|||||||||||||| |||||||||||
Sbjct: 41 ctccactgttctgcaacgtgaacagt 16
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgttcacgttgaagaacagtggag 26
||||||||||| ||||||||||||
Sbjct: 18 tgttcacgttgcagaacagtggag 41
>53994_ptc-miRf12172-akr:pmrd
Length = 153
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 81 gcaccatgtctccactgttctgctacgtgaacagt 115
||||||||||||||||||||||| |||||||||||
Sbjct: 49 gcaccatgtctccactgttctgcaacgtgaacagt 15
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgttcacgttgaagaacagtggagacatggt 33
||||||||||| |||||||||||||||||||
Sbjct: 17 tgttcacgttgcagaacagtggagacatggt 47
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3 tgttcacgttgaagaacagtggag 26
||||||||||||||||||||||||
Sbjct: 137 tgttcacgttgaagaacagtggag 114
>53518_ptc-miRf11696-akr:pmrd
Length = 150
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 81 gcaccatgtctccactgttctgctacgtgaacagt 115
||||||||||||||||||||||| |||||||||||
Sbjct: 46 gcaccatgtctccactgttctgcaacgtgaacagt 12
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgttcacgttgaagaacagtggagacatggt 33
||||||||||| |||||||||||||||||||
Sbjct: 14 tgttcacgttgcagaacagtggagacatggt 44
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 90 ctccactgttctgctacgtgaacagt 115
|||||||||||||| |||||||||||
Sbjct: 114 ctccactgttctgcaacgtgaacagt 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 3 tgttcacgttgaagaacagtggag 26
||||||||||| ||||||||||||
Sbjct: 137 tgttcacgttgcagaacagtggag 114
>53517_ptc-miRf11695-akr:pmrd
Length = 158
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 81 gcaccatgtctccactgttctgctacgtgaacagt 115
||||||||||||||||||||||| |||||||||||
Sbjct: 50 gcaccatgtctccactgttctgcaacgtgaacagt 16
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgttcacgttgaagaacagtggagacatggt 33
||||||||||| |||||||||||||||||||
Sbjct: 18 tgttcacgttgcagaacagtggagacatggt 48
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 90 ctccactgttctgctacgtgaacagt 115
|||||||||||||| |||||||||||
Sbjct: 118 ctccactgttctgcaacgtgaacagt 143
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 3 tgttcacgttgaagaacagtggag 26
||||||||||| ||||||||||||
Sbjct: 141 tgttcacgttgcagaacagtggag 118
>52070_ptc-miRf10248-akr:pmrd
Length = 151
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 81 gcaccatgtctccactgttctgctacgtgaacagt 115
||||||||||||||||||||||| |||||||||||
Sbjct: 104 gcaccatgtctccactgttctgcaacgtgaacagt 138
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3 tgttcacgttgaagaacagtggagacatggt 33
||||||||||| |||||||||||||||||||
Sbjct: 136 tgttcacgttgcagaacagtggagacatggt 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgttcacgttgaagaacagtggag 26
||||||||||||||||||||||||
Sbjct: 16 tgttcacgttgaagaacagtggag 39
>52349_ptc-miRf10527-akr:pmrd
Length = 147
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tccactgttctgctacgtgaacagt 115
|||||||||||||||||||||||||
Sbjct: 116 tccactgttctgctacgtgaacagt 140
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 86 atgtctccactgttctgctac 106
|||||||||||||||||||||
Sbjct: 40 atgtctccactgttctgctac 20
