miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53344_ptc-miRf11522-akr:pmrd
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gcaacggatattccattgctgatcagcaacggatattgcgttactgatccgttgctaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaacggatattccattgctgatcagcaacggatattgcgttactgatccgttgctaaat 60
Query: 61 agcaatggaaattttgttgt 80
||||||||||||||||||||
Sbjct: 61 agcaatggaaattttgttgt 80
>53562_ptc-miRf11740-akr:pmrd
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1 gcaacggatattccattgctgatcagcaacggatattgcgttactgatccgttgctaaat 60
|||||| ||||||| |||||||||||||| ||||||| ||| ||||||||||||| | |
Sbjct: 1 gcaacgaatattccgttgctgatcagcaatggatattctgttgctgatccgttgctgatt 60
Query: 61 agcaatggaaatt 73
| | |||||||||
Sbjct: 61 aacgatggaaatt 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 tccattgctgatcagcaacgga 33
||||||||||||||||||||||
Sbjct: 33 tccattgctgatcagcaacgga 12
>53561_ptc-miRf11739-akr:pmrd
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1 gcaacggatattccattgctgatcagcaacggatattgcgttactgatccgttgct 56
|||||| ||||||| |||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 25 gcaacgaatattccgttgctgatcagcaatggatattctgttgctgatccgttgct 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand = Plus / Minus
Query: 12 tccattgctgatcagcaacgg-atattgcgttactgatccgttgct 56
||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 57 tccattgctgatcagcaacggaatatt-cgttgctgatccgttgct 13
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ccattgctgatcagcaacggat 34
||||||||||||||||||||||
Sbjct: 1 ccattgctgatcagcaacggat 22
