miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54193_ptc-miRf12371-akr:pmrd
Length = 184
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 156 tgatgtgaacctcgtgatcacatggtcacgc 186
||||| |||||||||||||||||||||||||
Sbjct: 137 tgatgcgaacctcgtgatcacatggtcacgc 167
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| |||||||||||||||||||||
Sbjct: 165 gtgaccatgtgatcacgaggttcgcatca 137
>53417_ptc-miRf11595-akr:pmrd
Length = 164
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 156 tgatgtgaacctcgtgatcacatggtcacgc 186
||||| |||||||||||||||||||||||||
Sbjct: 38 tgatgcgaacctcgtgatcacatggtcacgc 8
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| |||||||||||||||||||||
Sbjct: 10 gtgaccatgtgatcacgaggttcgcatca 38
>54136_ptc-miRf12314-akr:pmrd
Length = 151
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatcag 32
||||||| ||||||||||||||||||||||
Sbjct: 18 gtgaccacgtgatcacgaggttcgcatcag 47
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 154 gctgatgtgaacctcgtgatcacatggtcacgc 186
||||||| ||||||||||||||| |||||||||
Sbjct: 48 gctgatgcgaacctcgtgatcacgtggtcacgc 16
>53197_ptc-miRf11375-akr:pmrd
Length = 151
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatcag 32
||||||| ||||||||||||||||||||||
Sbjct: 18 gtgaccacgtgatcacgaggttcgcatcag 47
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 154 gctgatgtgaacctcgtgatcacatggtcacgc 186
||||||| ||||||||||||||| |||||||||
Sbjct: 48 gctgatgcgaacctcgtgatcacgtggtcacgc 16
>52592_ptc-miRf10770-akr:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tgaccaagtgatcacgaggttcgcatca 31
|||||| |||||||||||||||||||||
Sbjct: 1 tgaccatgtgatcacgaggttcgcatca 28
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 156 tgatgtgaacctcgtgatcacatggtca 183
||||| ||||||||||||||||||||||
Sbjct: 28 tgatgcgaacctcgtgatcacatggtca 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 gtgatcacgaggttcgcatca 31
|||||||||||||||||||||
Sbjct: 164 gtgatcacgaggttcgcatca 144
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 156 tgatgtgaacctcgtgatcacatggtca 183
||||| ||||||||||||||||| ||||
Sbjct: 144 tgatgcgaacctcgtgatcacatagtca 171
>54233_ptc-miRf12411-akr:pmrd
Length = 169
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 156 tgatgtgaacctcgtgatcacatggtcacgc 186
|||||||||||| |||||||| |||||||||
Sbjct: 101 tgatgtgaaccttgtgatcacgtggtcacgc 71
>53921_ptc-miRf12099-akr:pmrd
Length = 146
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 156 tgatgtgaacctcgtgatcacatggtcacgc 186
||||| |||||| ||||||||||||||||||
Sbjct: 98 tgatgcgaaccttgtgatcacatggtcacgc 68
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| |||||||| ||||||||||||
Sbjct: 70 gtgaccatgtgatcacaaggttcgcatca 98
>54102_ptc-miRf12280-akr:pmrd
Length = 189
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 2 tgtgaccaagtgatcacgaggttcgcatca 31
|||||||| ||||||||||||||||||||
Sbjct: 172 tgtgaccacatgatcacgaggttcgcatca 143
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||| |||||||||||||
Sbjct: 19 gtgaccacgtgatcatgaggttcgcatca 47
>54101_ptc-miRf12279-akr:pmrd
Length = 189
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 2 tgtgaccaagtgatcacgaggttcgcatca 31
|||||||| ||||||||||||||||||||
Sbjct: 172 tgtgaccacatgatcacgaggttcgcatca 143
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||| |||||||||||||
Sbjct: 19 gtgaccacgtgatcatgaggttcgcatca 47
>53311_ptc-miRf11489-akr:pmrd
Length = 169
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tgtgaccaagtgatcacgaggttcgcatca 31
|||||||| ||||||||||||||||||||
Sbjct: 8 tgtgaccacatgatcacgaggttcgcatca 37
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||| |||||||||||||
Sbjct: 161 gtgaccacgtgatcatgaggttcgcatca 133
>53309_ptc-miRf11487-akr:pmrd
Length = 169
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tgtgaccaagtgatcacgaggttcgcatca 31
|||||||| ||||||||||||||||||||
Sbjct: 8 tgtgaccacatgatcacgaggttcgcatca 37
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||| |||||||||||||
Sbjct: 161 gtgaccacgtgatcatgaggttcgcatca 133
>53463_ptc-miRf11641-akr:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 tgaccaagtgatcacgaggttcgcatcag 32
|||||| ||||||||||||| ||||||||
Sbjct: 168 tgaccacgtgatcacgaggtccgcatcag 140
>53312_ptc-miRf11490-akr:pmrd
Length = 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||||||||||||||||
Sbjct: 1 gtgaccacatgatcacgaggttcgcatca 29
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||| |||||||||||||
Sbjct: 153 gtgaccacgtgatcatgaggttcgcatca 125
>53310_ptc-miRf11488-akr:pmrd
Length = 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||||||||||||||||
Sbjct: 1 gtgaccacatgatcacgaggttcgcatca 29
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 gtgaccaagtgatcacgaggttcgcatca 31
||||||| ||||||| |||||||||||||
Sbjct: 153 gtgaccacgtgatcatgaggttcgcatca 125
