miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 75.8 bits (38), Expect = 6e-15
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 4 tgttctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcagtgaaa 57
||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 37 tgttcagcagcgaaattgtgattcgctgccgaaactgagttgtctgcagcgaaa 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 tctgcagtgaaattgtgattcgctgc 32
||||||| ||||||||||||||||||
Sbjct: 79 tctgcagcgaaattgtgattcgctgc 104
>52783_ptc-miRf10961-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 2e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 7 tctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcagtgaa 56
||||||| |||||||||||| |||||||||| |||||| |||||||||||
Sbjct: 1 tctgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaa 50
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gtgtgttctgcagtgaaattgtgattcgctgccgaaa 37
||||||||||||| |||||||||||||||||||||||
Sbjct: 37 gtgtgttctgcagcgaaattgtgattcgctgccgaaa 73
>54190_ptc-miRf12368-akr:pmrd
Length = 143
Score = 63.9 bits (32), Expect = 2e-11
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 1 gtgtgttctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcag 52
||||||||||||| ||| |||||||||||||||||| |||||| || |||||
Sbjct: 93 gtgtgttctgcagcgaagttgtgattcgctgccgaagttgagtggtttgcag 42
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 9 tgcagtgaaattgtgattcgctgccgaaattgagtt 44
||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 46 tgcagcgaatttgcgattcgctgccgaaactgagtt 11
>53008_ptc-miRf11186-akr:pmrd
Length = 166
Score = 63.9 bits (32), Expect = 2e-11
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1 gtgtgttctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcagtgaa 56
||||||||||||| ||| ||||||||| ||||| || |||||||||||||| ||||
Sbjct: 104 gtgtgttctgcagcgaatttgtgattcactgccaaagttgagttgtctgcaatgaa 49
Score = 52.0 bits (26), Expect = 9e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 7 tctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcag 52
|||||| |||| ||||||||| ||| ||||| ||||||||||||||
Sbjct: 59 tctgcaatgaatttgtgattcactgtcgaaactgagttgtctgcag 14
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 19 ttgtgattcgctgccgaaattgagttgtctgcag 52
||||||||||||||||||| | ||||||||||||
Sbjct: 162 ttgtgattcgctgccgaaactaagttgtctgcag 129
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 61.9 bits (31), Expect = 9e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1 gtgtgttctgcagtgaaattgtgattcgctgccgaaattgagt 43
||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 41 gtgtgttgtgcagcgaaattgtgattcgctgccgaaactgagt 83
>52242_ptc-miRf10420-akr:pmrd
Length = 144
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 15 gaaattgtgattcgctgccgaaattgagttg 45
|||||||||||||||||||||||||||||||
Sbjct: 86 gaaattgtgattcgctgccgaaattgagttg 116
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 24 attcgctgccgaaattgagttgtctgcagtgaaacagttttcgct 68
||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct: 58 attcgatgtcgaaattgagttgtctgcagcgaaccagttttcgct 102
Score = 56.0 bits (28), Expect = 6e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 5 gttctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcagtgaa 56
|||| |||| ||||||||||||||||||||||| || || | ||||||||||
Sbjct: 1 gttcagcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaa 52
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 ctgcagcgaaccagttttcgctgc 106
||||||||||||||||||||||||
Sbjct: 81 ctgcagcgaaccagttttcgctgc 104
>53387_ptc-miRf11565-akr:pmrd
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 24 attcgctgccgaaattgagttgtctgcagtgaaacagttttcgct 68
||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct: 58 attcgatgtcgaaattgagttgtctgcagcgaaccagttttcgct 102
Score = 56.0 bits (28), Expect = 6e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 5 gttctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcagtgaa 56
|||| |||| ||||||||||||||||||||||| || || | ||||||||||
Sbjct: 1 gttcagcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaa 52
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 ctgcagcgaaccagttttcgctgc 106
||||||||||||||||||||||||
Sbjct: 81 ctgcagcgaaccagttttcgctgc 104
>52615_ptc-miRf10793-akr:pmrd
Length = 76
Score = 56.0 bits (28), Expect = 6e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 17 aattgtgattcgctgccgaaattgagttgtctgcagtgaaacagttttcgct 68
||||||||||||||||||||| ||||||||||| | ||| ||| |||||||
Sbjct: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgct 66
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 2 tgtgttctgcagtgaaattgtgattcgctgccgaaattgagt 43
|||||| ||||| ||| ||||||||||||||||||| |||||
Sbjct: 117 tgtgttgtgcagcgaatttgtgattcgctgccgaaactgagt 158
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 gtgtgttctgcagtgaaattgtgattcgctgccgaaa 37
||||||| ||||| |||| ||||||||||||||||||
Sbjct: 41 gtgtgttgtgcagcgaaactgtgattcgctgccgaaa 77
>54142_ptc-miRf12320-akr:pmrd
Length = 75
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 gtgtgttctgcagtgaaattgtgattcgctgcc 33
||||||||||||| ||| |||||||||||||||
Sbjct: 37 gtgtgttctgcagcgaatttgtgattcgctgcc 69
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 24 attcgctgccgaaattgagttgtctgcag 52
|||||||||||||| ||||||||||||||
Sbjct: 60 attcgctgccgaaactgagttgtctgcag 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 tctgcagtgaaattgtgattcgctgccgaaa 37
||||||| ||| |||||||||||||||||||
Sbjct: 82 tctgcagcgaatttgtgattcgctgccgaaa 112
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 ttcgctgccgaaattgagttgtctg 49
|||||||||||||||||||||||||
Sbjct: 63 ttcgctgccgaaattgagttgtctg 87
>52815_ptc-miRf10993-akr:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 ttcgctgccgaaattgagttgtctg 49
|||||||||||||||||||||||||
Sbjct: 63 ttcgctgccgaaattgagttgtctg 87
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 tctgcagtgaaattgtgattcgctgccgaa 36
||||||| ||| ||||||||||||||||||
Sbjct: 36 tctgcagcgaatttgtgattcgctgccgaa 65
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 24 attcgctgccgaaattgagttgtctgcag 52
|||||||||||||| |||||||||||||
Sbjct: 14 attcgctgccgaaacggagttgtctgcag 42
>53007_ptc-miRf11185-akr:pmrd
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 ctgcagcgaaccagttttcgctgc 106
|||||||||| |||||||||||||
Sbjct: 1 ctgcagcgaatcagttttcgctgc 24
>52237_ptc-miRf10415-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 ctgccgaaattgagttgtctgcag 52
|||||||||||||||||| |||||
Sbjct: 101 ctgccgaaattgagttgtttgcag 124
