miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52781_ptc-miRf10959-akr:pmrd
Length = 155
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 ctttgataccatgtcaaagaaccatctcaa 30
||||||||||||||||||||||||||||||
Sbjct: 41 ctttgataccatgtcaaagaaccatctcaa 12
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 4 tgataccatgtcaaagaaccatctcaatctaa 35
||||||||||||||||||||||||||| ||||
Sbjct: 118 tgataccatgtcaaagaaccatctcaacctaa 149
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 52 gttgagatggttctttgacatgatagcaaag 82
|||||||||||||||||||||| || |||||
Sbjct: 11 gttgagatggttctttgacatggtatcaaag 41
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 51 ggttgagatggttctttgacatg 73
|||||||||||||||||||||||
Sbjct: 146 ggttgagatggttctttgacatg 124
>51802_ptc-miR481b:pmrd
Length = 220
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 39 cttaagttgttgggttgagatggttctttgacatgata 76
|||||| | |||||||||||||||||||||||||||||
Sbjct: 23 cttaagctattgggttgagatggttctttgacatgata 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 4 tgataccatgtcaaagaaccatctcaa 30
||||| |||||||||||||||||||||
Sbjct: 63 tgatatcatgtcaaagaaccatctcaa 37
>54042_ptc-miRf12220-akr:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 30 atctaaaaacttaagttgttgggttgagatggttctttgacatgata 76
|||||| | |||||| | ||||||||||||||||| |||||||||||
Sbjct: 69 atctaacagcttaagctattgggttgagatggttccttgacatgata 23
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 4 tgataccatgtcaaagaaccatctcaa 30
||||| |||||||| ||||||||||||
Sbjct: 20 tgatatcatgtcaaggaaccatctcaa 46
>53218_ptc-miRf11396-akr:pmrd
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 30 atctaaaaacttaagttgttgggttgagatggttctttgacatgata 76
|||||| | |||||| | ||||||||||||||||| |||||||||||
Sbjct: 53 atctaacagcttaagctattgggttgagatggttccttgacatgata 99
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 4 tgataccatgtcaaagaaccatctcaa 30
||||| |||||||| ||||||||||||
Sbjct: 102 tgatatcatgtcaaggaaccatctcaa 76
>51803_ptc-miR481c:pmrd
Length = 195
Score = 52.0 bits (26), Expect = 6e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 39 cttaagttgttgggttgagatggttctttgacatgata 76
|||||| | ||||||||||||| |||||||||||||||
Sbjct: 23 cttaagcttttgggttgagatgattctttgacatgata 60
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 4 tgataccatgtcaaagaaccatctcaatctaaaaacttaagttgtt 49
||||| |||||||||||| |||||||| | |||| |||||| ||||
Sbjct: 63 tgatatcatgtcaaagaatcatctcaacccaaaagcttaagctgtt 18
>54258_ptc-miRf12436-akr:pmrd
Length = 165
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 4 tgataccatgtcaaagaaccatctcaatctaa 35
||||||||||| ||||||||||||||| ||||
Sbjct: 148 tgataccatgttaaagaaccatctcaacctaa 117
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgataccatgtcaaagaaccat 25
||||||||||||||||||||||
Sbjct: 18 tgataccatgtcaaagaaccat 39
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 ggttgagatggttctttgacatg 73
||||||||||||||||| |||||
Sbjct: 120 ggttgagatggttctttaacatg 142
>53491_ptc-miRf11669-akr:pmrd
Length = 167
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 tgataccatgtcaaagaaccatctcaatctaa 35
||||||||||| ||||||||||||||| ||||
Sbjct: 19 tgataccatgttaaagaaccatctcaacctaa 50
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 tgataccatgtcaaagaaccat 25
||||||||||||||||||||||
Sbjct: 149 tgataccatgtcaaagaaccat 128
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 51 ggttgagatggttctttgacatg 73
||||||||||||||||| |||||
Sbjct: 47 ggttgagatggttctttaacatg 25
>51805_ptc-miR481e:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 39 cttaagttgttgggttgagatggttctttgacatg 73
|||||| | ||||||||||||| ||||||||||||
Sbjct: 23 cttaagctattgggttgagatgattctttgacatg 57
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 4 tgataccatgtcaaagaaccatctcaa 30
|||||||||||||||||| ||||||||
Sbjct: 63 tgataccatgtcaaagaatcatctcaa 37
