miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53368_ptc-miRf11546-akr:pmrd
Length = 78
Score = 155 bits (78), Expect = 9e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 25 ttcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtag 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtag 60
Query: 85 gtggtccaatggtaagag 102
||||||||||||||||||
Sbjct: 61 gtggtccaatggtaagag 78
>52556_ptc-miRf10734-akr:pmrd
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 26 tcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtagg 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtagg 17
Query: 86 tggtccaatggtaaga 101
||||||||||||||||
Sbjct: 16 tggtccaatggtaaga 1
>53369_ptc-miRf11547-akr:pmrd
Length = 74
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 27 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 60
Query: 87 ggtccaatggtaag 100
||||||||||||||
Sbjct: 61 ggtccaatggtaag 74
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 89.7 bits (45), Expect = 5e-19
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1 gggagcaaacctcttgatcccaagttcttaccactggaccaccac 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gggagcaaacctcttgatcccaagttcttaccactggaccaccac 1
>52719_ptc-miRf10897-akr:pmrd
Length = 119
Score = 89.7 bits (45), Expect = 5e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 3 gagcaaacctcttgatcccaagttcttaccactggaccaccacctagatggtt 55
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccacctagatggtt 53
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 79.8 bits (40), Expect = 4e-16
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 8 aacctcttgatcccaagttcttaccactggaccaccacctagatggtt 55
||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 109 aacctcttggtcccaagctcttaccactggaccaccacctagatggtt 62
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 4 agcaaacctcttgatcccaagttcttaccactggaccaccacctagatg 52
||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 49 agcaaacctcttgatcccaggcttttaccactggaccaccacctagatg 1
>53645_ptc-miRf11823-akr:pmrd
Length = 99
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 13 cttgatcccaagttcttaccactggaccaccacctagatggtt 55
|||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 99 cttggtcccaagctcttaccactggaccaccacctagatggtt 57
>52747_ptc-miRf10925-akr:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 3 gagcaaacctcttgatcccaagttcttaccactggaccaccac 45
||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 43 gagcaaacctcttgatcccaaattcttaccactgggccaccac 1
>53986_ptc-miRf12164-akr:pmrd
Length = 81
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 1 gggagcaaacctcttgatcccaagttcttaccactgg 37
|||| ||||||||||||||||||||||||||||||||
Sbjct: 45 gggaacaaacctcttgatcccaagttcttaccactgg 9
>53985_ptc-miRf12163-akr:pmrd
Length = 81
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 1 gggagcaaacctcttgatcccaagttcttaccactgg 37
|||| ||||||||||||||||||||||||||||||||
Sbjct: 45 gggaacaaacctcttgatcccaagttcttaccactgg 9
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 6 caaacctcttgatcccaagttcttaccactggaccaccac 45
||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 40 caaacttcttgatcccaagctcttaccactggaccaccac 1
>53981_ptc-miRf12159-akr:pmrd
Length = 92
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 1 gggagcaaacctcttgatcccaagttcttaccactggaccaccacctagat 51
|||||||||||||||| ||||||| |||||||||||| || |||||||||
Sbjct: 51 gggagcaaacctcttggtcccaagctcttaccactgggtcatcacctagat 1
>53982_ptc-miRf12160-akr:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1 gggagcaaacctcttgatcccaagttcttaccactggaccaccac 45
|||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 45 gggagcaaacctcttggtcccaagctcttaccactgagccaccac 1
>53706_ptc-miRf11884-akr:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 4 agcaaacctcttgatcccaagttcttaccactggaccacca 44
||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 42 agcaaacctcttggtcccaagctcttaccactgggccacca 2
>52111_ptc-miRf10289-akr:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1 gggagcaaacctcttgatcccaagttcttaccactggaccaccac 45
|||||||||| ||||| ||||||| |||||||||||| |||||||
Sbjct: 45 gggagcaaacatcttggtcccaagctcttaccactgggccaccac 1
>53107_ptc-miRf11285-akr:pmrd
Length = 81
Score = 56.0 bits (28), Expect = 6e-09
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 2 ggagcaaacctcttgatcccaagttcttaccactggaccaccac 45
||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 44 ggagcaaacctcttggtcccaaactcttaccactgggccaccac 1
>54124_ptc-miRf12302-akr:pmrd
Length = 81
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 3 gagcaaacctcttgatcccaagttcttaccactggaccaccac 45
||||||| |||||| ||||||| |||||||||||| |||||||
Sbjct: 43 gagcaaatctcttggtcccaagctcttaccactgggccaccac 1
>53901_ptc-miRf12079-akr:pmrd
Length = 72
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 ttaccactggaccaccacctagatg 52
|||||||||||||||||||||||||
Sbjct: 1 ttaccactggaccaccacctagatg 25
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 28 ttaccactggaccaccacctagatggtta 56
|||| ||||||||||||||||||||||||
Sbjct: 72 ttactactggaccaccacctagatggtta 44
>52918_ptc-miRf11096-akr:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1 gggagcaaacctcttgatcccaagttcttaccactg 36
||||||||||| ||| ||||||| |||||||||||
Sbjct: 45 gggagcaaaccccttagtcccaagctcttaccactg 10
