miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53367_ptc-miRf11545-akr:pmrd
Length = 126
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ttcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 ttcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtag 84
Query: 61 gtggtccaatggtaagag 78
||||||||||||||||||
Sbjct: 85 gtggtccaatggtaagag 102
>52556_ptc-miRf10734-akr:pmrd
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 2 tcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tcttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtagg 17
Query: 62 tggtccaatggtaaga 77
||||||||||||||||
Sbjct: 16 tggtccaatggtaaga 1
>53369_ptc-miRf11547-akr:pmrd
Length = 74
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 3 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 60
Query: 63 ggtccaatggtaag 76
||||||||||||||
Sbjct: 61 ggtccaatggtaag 74
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 2 tcttaccactggaccaccacctagatggtt 31
||||||||||||||||||||||||||||||
Sbjct: 91 tcttaccactggaccaccacctagatggtt 62
>53645_ptc-miRf11823-akr:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 2 tcttaccactggaccaccacctagatggtt 31
||||||||||||||||||||||||||||||
Sbjct: 86 tcttaccactggaccaccacctagatggtt 57
>52719_ptc-miRf10897-akr:pmrd
Length = 119
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 2 tcttaccactggaccaccacctagatggtt 31
||||||||||||||||||||||||||||||
Sbjct: 24 tcttaccactggaccaccacctagatggtt 53
>53901_ptc-miRf12079-akr:pmrd
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 ttaccactggaccaccacctagatg 28
|||||||||||||||||||||||||
Sbjct: 1 ttaccactggaccaccacctagatg 25
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 ttaccactggaccaccacctagatggtta 32
|||| ||||||||||||||||||||||||
Sbjct: 72 ttactactggaccaccacctagatggtta 44
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 ttaccactggaccaccacctagatg 28
|||||||||||||||||||||||||
Sbjct: 25 ttaccactggaccaccacctagatg 1
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 ttcttaccactggaccaccac 21
|||||||||||||||||||||
Sbjct: 21 ttcttaccactggaccaccac 1
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 tcttaccactggaccaccac 21
||||||||||||||||||||
Sbjct: 20 tcttaccactggaccaccac 1
