miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53368_ptc-miRf11546-akr:pmrd
Length = 78
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 62
Query: 61 ggtccaatggtaag 74
||||||||||||||
Sbjct: 63 ggtccaatggtaag 76
>53367_ptc-miRf11545-akr:pmrd
Length = 126
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 86
Query: 61 ggtccaatggtaag 74
||||||||||||||
Sbjct: 87 ggtccaatggtaag 100
>52556_ptc-miRf10734-akr:pmrd
Length = 76
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 1 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 cttaccactggaccaccacctagatggttagatgatgtagtttttaatcatctagtaggt 16
Query: 61 ggtccaatggtaag 74
||||||||||||||
Sbjct: 15 ggtccaatggtaag 2
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1 cttaccactggaccaccacctagatggtt 29
|||||||||||||||||||||||||||||
Sbjct: 90 cttaccactggaccaccacctagatggtt 62
>53645_ptc-miRf11823-akr:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1 cttaccactggaccaccacctagatggtt 29
|||||||||||||||||||||||||||||
Sbjct: 85 cttaccactggaccaccacctagatggtt 57
>52719_ptc-miRf10897-akr:pmrd
Length = 119
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 cttaccactggaccaccacctagatggtt 29
|||||||||||||||||||||||||||||
Sbjct: 25 cttaccactggaccaccacctagatggtt 53
>53901_ptc-miRf12079-akr:pmrd
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 ttaccactggaccaccacctagatg 26
|||||||||||||||||||||||||
Sbjct: 1 ttaccactggaccaccacctagatg 25
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 2 ttaccactggaccaccacctagatggtta 30
|||| ||||||||||||||||||||||||
Sbjct: 72 ttactactggaccaccacctagatggtta 44
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 2 ttaccactggaccaccacctagatg 26
|||||||||||||||||||||||||
Sbjct: 25 ttaccactggaccaccacctagatg 1
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 cttaccactggaccaccac 19
|||||||||||||||||||
Sbjct: 19 cttaccactggaccaccac 1
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 cttaccactggaccaccac 19
|||||||||||||||||||
Sbjct: 19 cttaccactggaccaccac 1
