miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54004_ptc-miRf12182-akr:pmrd
Length = 127
Score = 81.8 bits (41), Expect = 8e-17
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 1 gggttgacctgccggattgaccgggtttggccgagtcgttgcaccgaccagtcttttgac 60
||||||||| ||||| | ||| ||||||| ||| ||||||||| |||| ||||||||||
Sbjct: 12 gggttgacccgccgggtcgactgggtttgaccgggtcgttgcattgaccggtcttttgac 71
Query: 61 aaacccggaacggtccagcccccaggtcg 89
||||||| | ||||||||||||| |||||
Sbjct: 72 aaacccgaaccggtccagcccccgggtcg 100
>52059_ptc-miRf10237-akr:pmrd
Length = 97
Score = 75.8 bits (38), Expect = 5e-15
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 19 gaccgggtttggccgagtcgttgcaccgaccagtcttttgacaaacccggaacggtccag 78
||||||||||||||| | |||||||||| | ||||||||||||||||||| |||||||
Sbjct: 84 gaccgggtttggccgtgccgttgcaccggctggtcttttgacaaacccggactggtccag 25
Query: 79 cccccaggtcgacc 92
|| || ||||||||
Sbjct: 24 ccaccgggtcgacc 11
>52252_ptc-miRf10430-akr:pmrd
Length = 113
Score = 58.0 bits (29), Expect = 1e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 19 gaccgggtttggccgagtcgttgcaccgaccagtcttttgacaaacccggaacggtccag 78
|||| ||||||| || |||||||| |||||| |||||||||||||||| |||| |||||
Sbjct: 23 gaccaggtttggtcgggtcgttgccccgaccggtcttttgacaaacccaaaacgatccag 82
Query: 79 c 79
|
Sbjct: 83 c 83
>52133_ptc-miRf10311-akr:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1 gggttgacctgccggattgaccgggtttggccgagtcgttgcaccgaccagtcttttgac 60
||||||||| ||| | | |||||||||| |||| ||| ||||| | ||| ||||||||||
Sbjct: 122 gggttgacccgcctggtcgaccgggttttgccgggtcattgcatcaaccggtcttttgac 63
Query: 61 aaaccc 66
||||||
Sbjct: 62 aaaccc 57
>52132_ptc-miRf10310-akr:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 1 gggttgacctgccggattgaccgggtttggccgagtcgttgcaccgaccagtcttttgac 60
||||||||| ||| | | |||||||||| |||| ||| ||||| | ||| ||||||||||
Sbjct: 122 gggttgacccgcctggtcgaccgggttttgccgggtcattgcatcaaccggtcttttgac 63
Query: 61 aaaccc 66
||||||
Sbjct: 62 aaaccc 57
>52345_ptc-miRf10523-akr:pmrd
Length = 125
Score = 50.1 bits (25), Expect = 3e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 35 gtcgttgcaccgaccagtcttttgacaaacccggaacggtccagc 79
|||||||||||| || |||||||| |||||||| | |||||||||
Sbjct: 50 gtcgttgcaccggccggtcttttggcaaacccgaatcggtccagc 94
