miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54155_ptc-miRf12333-akr:pmrd
Length = 95
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1 agtgaattgggtctagatgaaggacccaagagattgggcctgacacaagacccattgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 agtgaattgggtctagatgaaggacccaagagattgggcctgacacaagacccattgtcc 33
Query: 61 ttgggtcctgacgcaagacccattcgact 89
|||||||||||||||||||||||||||||
Sbjct: 32 ttgggtcctgacgcaagacccattcgact 4
>53959_ptc-miRf12137-akr:pmrd
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 agtgaattgggtctagatgaaggacccaagagattgggcctgacacaagacccattgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgaattgggtctagatgaaggacccaagagattgggcctgacacaagacccattgtcc 60
Query: 61 ttgggtcctgacgcaagacccattcgact 89
|||||||||||||||||||||||||||||
Sbjct: 61 ttgggtcctgacgcaagacccattcgact 89
>53109_ptc-miRf11287-akr:pmrd
Length = 95
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1 agtgaattgggtctagatgaaggacccaagagattgggcctgacacaagacccattgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 agtgaattgggtctagatgaaggacccaagagattgggcctgacacaagacccattgtcc 33
Query: 61 ttgggtcctgacgcaagacccattcgact 89
|||||||||||||||||||||||||||||
Sbjct: 32 ttgggtcctgacgcaagacccattcgact 4
>54156_ptc-miRf12334-akr:pmrd
Length = 95
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Minus
Query: 1 agtgaattgggtctagatgaaggacccaagagattgggcctgacacaagacccattgtcc 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 92 agtgaattgagtctagatgaaggacccaagagattgggcctgacgcaagacccattgccc 33
Query: 61 ttgggtcctgacgcaagacccattcgact 89
||||||||||||||| |||||||||||||
Sbjct: 32 ttgggtcctgacgcaggacccattcgact 4
>52557_ptc-miRf10735-akr:pmrd
Length = 88
Score = 93.7 bits (47), Expect = 2e-20
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 43 acacaagacccattgtccttgggtcctgacgcaagacccattcgact 89
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 acacaagacccattgtccttgggtcctgacgcaagacccattcgact 42
>52558_ptc-miRf10736-akr:pmrd
Length = 105
Score = 87.7 bits (44), Expect = 1e-18
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 34 ttgggcctgacacaagacccattgtccttgggtcctgacgcaagacccattcgact 89
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 105 ttgggcctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgact 50
>53373_ptc-miRf11551-akr:pmrd
Length = 95
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 39 cctgacacaagacccattgtccttgggtcctgacgcaagacccattcgact 89
|||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgact 51
>52143_ptc-miRf10321-akr:pmrd
Length = 88
Score = 71.9 bits (36), Expect = 7e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 46 caagacccattgtccttgggtcctgacgcaagacccattcgact 89
|||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 4 caagacccattgcccttgggtcctgacgcaggacccattcgact 47
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 49 gacccattgtccttgggtcctgacgcaagaccca 82
|||||||| ||||||||||||||||||||||||
Sbjct: 37 gacccattacccttgggtcctgacgcaagaccca 4
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 59 ccttgggtcctgacgcaagaccca 82
|||||||||||||||| |||||||
Sbjct: 110 ccttgggtcctgacgccagaccca 87
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 49 gacccattgtccttgggtcctgacgcaagaccca 82
|||||||| ||||||||||||||||||||||||
Sbjct: 83 gacccattacccttgggtcctgacgcaagaccca 50
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 gacccattgtccttgggtcctgacgcaagaccca 82
|||||||| ||||||||||||||||||||||||
Sbjct: 6 gacccattacccttgggtcctgacgcaagaccca 39
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 gacccattgtccttgggtcctgacgcaagaccca 82
|||||||| ||||||||||||||||||||||||
Sbjct: 6 gacccattacccttgggtcctgacgcaagaccca 39
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 gacccattgtccttgggtcctgacgcaagaccca 82
|||||||| ||||||||||||||||||||||||
Sbjct: 6 gacccattacccttgggtcctgacgcaagaccca 39
>54238_ptc-miRf12416-akr:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 ttgggtcctgacgcaagacc 80
||||||||||||||||||||
Sbjct: 24 ttgggtcctgacgcaagacc 43
>52614_ptc-miRf10792-akr:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 ttgggtcctgacgcaagacc 80
||||||||||||||||||||
Sbjct: 24 ttgggtcctgacgcaagacc 43
