miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52558_ptc-miRf10736-akr:pmrd
Length = 105
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgacttaggttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgacttaggttctg 41
Query: 61 aggcaagatccaagagcattgggtcctagcgtagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 40 aggcaagatccaagagcattgggtcctagcgtagg 6
>52143_ptc-miRf10321-akr:pmrd
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 5 acgcaagacccattgcccttgggtcctgacgcaggacccattcgacttaggttctgaggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgcaagacccattgcccttgggtcctgacgcaggacccattcgacttaggttctgaggc 60
Query: 65 aagatccaagagcattgggtcctagcgt 92
||||||||||||||||||||||||||||
Sbjct: 61 aagatccaagagcattgggtcctagcgt 88
>52557_ptc-miRf10735-akr:pmrd
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 77/80 (96%)
Strand = Plus / Minus
Query: 8 caagacccattgcccttgggtcctgacgcaggacccattcgacttaggttctgaggcaag 67
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 85 caagacccattgtccttgggtcctgacgcaagacccattcgacttgggttctgaggcaag 26
Query: 68 atccaagagcattgggtcct 87
||||||||||||||||||||
Sbjct: 25 atccaagagcattgggtcct 6
>54156_ptc-miRf12334-akr:pmrd
Length = 95
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgacttag 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgacttag 1
>54155_ptc-miRf12333-akr:pmrd
Length = 95
Score = 79.8 bits (40), Expect = 3e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 1 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgactt 52
|||||| |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 54 cctgacacaagacccattgtccttgggtcctgacgcaagacccattcgactt 3
>53109_ptc-miRf11287-akr:pmrd
Length = 95
Score = 79.8 bits (40), Expect = 3e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 1 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgactt 52
|||||| |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 54 cctgacacaagacccattgtccttgggtcctgacgcaagacccattcgactt 3
>53959_ptc-miRf12137-akr:pmrd
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgact 51
|||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 39 cctgacacaagacccattgtccttgggtcctgacgcaagacccattcgact 89
>53372_ptc-miRf11550-akr:pmrd
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 cctgacgcaagacccattgcccttgggtcctgacgcaggacccattcgact 51
|||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 39 cctgacacaagacccattgtccttgggtcctgacgcaagacccattcgact 89
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 11 gacccattgcccttgggtcctgacgcaggaccca 44
|||||||| |||||||||||||||||| ||||||
Sbjct: 37 gacccattacccttgggtcctgacgcaagaccca 4
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 11 gacccattgcccttgggtcctgacgcaggaccca 44
|||||||| |||||||||||||||||| ||||||
Sbjct: 83 gacccattacccttgggtcctgacgcaagaccca 50
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 gacccattgcccttgggtcctgacgcaggaccca 44
|||||||| |||||||||||||||||| ||||||
Sbjct: 6 gacccattacccttgggtcctgacgcaagaccca 39
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 gacccattgcccttgggtcctgacgcaggaccca 44
|||||||| |||||||||||||||||| ||||||
Sbjct: 6 gacccattacccttgggtcctgacgcaagaccca 39
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 gacccattgcccttgggtcctgacgcaggaccca 44
|||||||| |||||||||||||||||| ||||||
Sbjct: 6 gacccattacccttgggtcctgacgcaagaccca 39
>54192_ptc-miRf12370-akr:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 cttgggtcctgacgcaggaccca 44
|||||||||||||||||||||||
Sbjct: 108 cttgggtcctgacgcaggaccca 130
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 6 cgcaagacccattgcccttgggtcctgacgcaggacc 42
|||| |||||||| |||||||| |||||||||||||
Sbjct: 37 cgcaggacccattagccttgggttctgacgcaggacc 1
>52359_ptc-miRf10537-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 cttgggtcctgacgcaggacccatt 46
|||||||| ||||||||||||||||
Sbjct: 16 cttgggtcgtgacgcaggacccatt 40
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 6 cgcaagacccattgcccttgggtcctgacgcaggacc 42
|||| |||||||| |||||||| |||||||||||||
Sbjct: 37 cgcaggacccattagccttgggttctgacgcaggacc 1
>52780_ptc-miRf10958-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1 cctgacgcaagacccattgcccttgggtcctgacgc 36
||||| ||| ||||||| |||||||||||||||||
Sbjct: 95 cctgatgcatgacccatcacccttgggtcctgacgc 60
>52618_ptc-miRf10796-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 23 ttgggtcctgacgcaggacccatt 46
||||||||| ||||||||||||||
Sbjct: 51 ttgggtcctaacgcaggacccatt 74
