miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53375_ptc-miRf11553-akr:pmrd
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 5 gcgatccaacggtcggatcaaaagttgtggcgccagaccggaataacagctgaaaaatgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgatccaacggtcggatcaaaagttgtggcgccagaccggaataacagctgaaaaatgt 60
Query: 65 cataacttttgatccgaccgttggatcgc 93
|||||||||||||||||||||||||||||
Sbjct: 61 cataacttttgatccgaccgttggatcgc 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 68 aacttttgatccgaccgttggatcgc 93
||||||||||||||||||||||||||
Sbjct: 26 aacttttgatccgaccgttggatcgc 1
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 gcgatccaacggtcggatcaaaagtt 30
||||||||||||||||||||||||||
Sbjct: 89 gcgatccaacggtcggatcaaaagtt 64
>52638_ptc-miRf10816-akr:pmrd
Length = 115
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 65 cataacttttgatccgaccgttggatcgcgctc 97
|||||||||||||||||||||||||||||||||
Sbjct: 37 cataacttttgatccgaccgttggatcgcgctc 5
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 gcgatccaacggtcggatcaaaagttgtggc 35
|||||||||||||||||||||||||| ||||
Sbjct: 9 gcgatccaacggtcggatcaaaagttatggc 39
>52216_ptc-miRf10394-akr:pmrd
Length = 102
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 65 cataacttttgatccgaccgttggatcgcgc 95
|||||||||||||||||||||||||||||||
Sbjct: 72 cataacttttgatccgaccgttggatcgcgc 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 5 gcgatccaacggtcggatcaaaagttgtggc 35
|||||||||||||||||||||||||| ||||
Sbjct: 100 gcgatccaacggtcggatcaaaagttatggc 70
>53394_ptc-miRf11572-akr:pmrd
Length = 157
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 cgatccaacggtcggatcaaaagttgtggc 35
||||||||||||||||| ||||||| ||||
Sbjct: 35 cgatccaacggtcggatgaaaagttttggc 6
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 68 aacttttgatccgaccgttggatcg 92
||||||| |||||||||||||||||
Sbjct: 11 aacttttcatccgaccgttggatcg 35
>53213_ptc-miRf11391-akr:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68 aacttttgatccgaccgttggatcgcgct 96
|||| ||||||||||||||| ||||||||
Sbjct: 96 aactattgatccgaccgttgcatcgcgct 68
>53212_ptc-miRf11390-akr:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68 aacttttgatccgaccgttggatcgcgct 96
|||| ||||||||||||||| ||||||||
Sbjct: 96 aactattgatccgaccgttgcatcgcgct 68
