miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53374_ptc-miRf11552-akr:pmrd
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gcgatccaacggtcggatcaaaagttgtggcgccagaccggaataacagctgaaaaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcgatccaacggtcggatcaaaagttgtggcgccagaccggaataacagctgaaaaatgt 64
Query: 61 cataacttttgatccgaccgttggatcgc 89
|||||||||||||||||||||||||||||
Sbjct: 65 cataacttttgatccgaccgttggatcgc 93
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 64 aacttttgatccgaccgttggatcgc 89
||||||||||||||||||||||||||
Sbjct: 30 aacttttgatccgaccgttggatcgc 5
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 gcgatccaacggtcggatcaaaagtt 26
||||||||||||||||||||||||||
Sbjct: 93 gcgatccaacggtcggatcaaaagtt 68
>52638_ptc-miRf10816-akr:pmrd
Length = 115
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 61 cataacttttgatccgaccgttggatcgc 89
|||||||||||||||||||||||||||||
Sbjct: 37 cataacttttgatccgaccgttggatcgc 9
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gcgatccaacggtcggatcaaaagttgtggc 31
|||||||||||||||||||||||||| ||||
Sbjct: 9 gcgatccaacggtcggatcaaaagttatggc 39
>52216_ptc-miRf10394-akr:pmrd
Length = 102
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 61 cataacttttgatccgaccgttggatcgc 89
|||||||||||||||||||||||||||||
Sbjct: 72 cataacttttgatccgaccgttggatcgc 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 gcgatccaacggtcggatcaaaagttgtggc 31
|||||||||||||||||||||||||| ||||
Sbjct: 100 gcgatccaacggtcggatcaaaagttatggc 70
>53394_ptc-miRf11572-akr:pmrd
Length = 157
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 2 cgatccaacggtcggatcaaaagttgtggc 31
||||||||||||||||| ||||||| ||||
Sbjct: 35 cgatccaacggtcggatgaaaagttttggc 6
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64 aacttttgatccgaccgttggatcg 88
||||||| |||||||||||||||||
Sbjct: 11 aacttttcatccgaccgttggatcg 35
