miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 gttcagcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcagcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacatt 60
Query: 61 cgatgtcgaaattgagttgtctgcagcgaaccagttttcgctgccgaat 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgatgtcgaaattgagttgtctgcagcgaaccagttttcgctgccgaat 109
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 105 bits (53), Expect = 7e-24
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcgatg 65
||||||||| | ||||||||||||||||||||||| ||||||| |||||| |||||| ||
Sbjct: 8 gcagcgaaactctgattcgctgccgaaactgtgtcagctgcagcgaattagcattcgctg 67
Query: 66 tcgaaattgagttgtctgcagcgaa 90
||||| ||||||||||||||||||
Sbjct: 68 ccgaaactgagttgtctgcagcgaa 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaac 34
|||||||| ||||||||||||||||||||
Sbjct: 85 gcagcgaatttgtgattcgctgccgaaac 113
>52207_ptc-miRf10385-akr:pmrd
Length = 112
Score = 85.7 bits (43), Expect = 6e-18
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcgatg 65
||||||||| | |||||| |||||||||||||||| ||||||| |||||| |||||| ||
Sbjct: 8 gcagcgaaactctgattcactgccgaaactgtgtcagctgcagcgaattagcattcgctg 67
Query: 66 tcgaaattgagttgtctgcagcgaaccagttttcgctgccgaa 108
||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 68 ccgaaactgagtcttctgcagcgaattagcattcgctgccgaa 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 20 attcgctgccgaaactgtgtcggctgcagtgaattaacattcgatgtcgaaa 71
||||||||||||||||| ||| |||||| |||||| |||||| || |||||
Sbjct: 60 attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgccgaaa 111
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 77.8 bits (39), Expect = 1e-15
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcgatg 65
||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||| ||
Sbjct: 50 gcagcgaaactgtgattcgctgccgaaactgcgtcggctgcagcaaattagcattcgctg 109
Query: 66 tcgaaattgagttgt 80
||||| || |||||
Sbjct: 110 ccgaaactgtgttgt 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactg 36
|||||||| ||||||||||||||||||||||
Sbjct: 125 gcagcgaatttgtgattcgctgccgaaactg 155
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 71.9 bits (36), Expect = 9e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 gttcagcagcgaaattgtgattcgctgccgaaactg 36
||||||||||||||||||||||||||||||||||||
Sbjct: 38 gttcagcagcgaaattgtgattcgctgccgaaactg 73
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgc 28
|||||||||||||||||||||||
Sbjct: 82 gcagcgaaattgtgattcgctgc 104
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 58 attcgatgtcgaaattgagttgtctgcagcgaa 90
||||| || ||||| ||||||||||||||||||
Sbjct: 57 attcgctgccgaaactgagttgtctgcagcgaa 89
>52355_ptc-miRf10533-akr:pmrd
Length = 112
Score = 69.9 bits (35), Expect = 4e-13
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcgatg 65
||||||||| | |||||| |||||||||||| ||| |||||| |||||| |||||| ||
Sbjct: 8 gcagcgaaactctgattcactgccgaaactgagtcttctgcagcgaattagcattcgctg 67
Query: 66 tcgaaattgagttgtctgcagcgaaccagttttcgctgccgaa 108
||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 68 ccgaaactgagtcttctgcagcgaattagcattcgctgccgaa 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 20 attcgctgccgaaactgtgtcggctgcagtgaattaacattcgatgtcgaaa 71
||||||||||||||||| ||| |||||| |||||| |||||| || |||||
Sbjct: 60 attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgccgaaa 111
>52783_ptc-miRf10961-akr:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 6e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||
Sbjct: 4 gcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcg 60
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 cagcgaaattgtgattcgctgccga 31
||||||| |||||||||||||||||
Sbjct: 79 cagcgaatttgtgattcgctgccga 103
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactg 36
|||||||||||||||||||||||||||||||
Sbjct: 50 gcagcgaaattgtgattcgctgccgaaactg 80
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 73 tgagttgtctgcagcgaaccagttttcgctgccgaat 109
|||||||||||||||||| || |||||||||||||
Sbjct: 3 tgagttgtctgcagcgaattagcattcgctgccgaat 39
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gttcagcagcgaaattgtgattcgctgccgaaact 35
|||| ||||||||||||||||||||||||||||||
Sbjct: 41 gttctgcagcgaaattgtgattcgctgccgaaact 75
>53359_ptc-miRf11537-akr:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 1e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 58 attcgatgtcgaaattgagttgtctgcagcgaaccagttttcgct 102
||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct: 24 attcgctgccgaaattgagttgtctgcagtgaaacagttttcgct 68
Score = 56.0 bits (28), Expect = 5e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1 gttcagcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaa 52
|||| |||| ||||||||||||||||||||||| || || | ||||||||||
Sbjct: 5 gttctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcagtgaa 56
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 ctgcagcgaaccagttttcgctgc 104
||||||||||||||||||||||||
Sbjct: 83 ctgcagcgaaccagttttcgctgc 106
>52242_ptc-miRf10420-akr:pmrd
Length = 144
Score = 56.0 bits (28), Expect = 5e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 7 cagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||||||||||||||||||| || || | ||||| |||||| ||||||
Sbjct: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcg 137
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 gttgtctgcagcgaaccagttttcgctgccgaa 108
||||||||||||||| ||| |||||||||||||
Sbjct: 42 gttgtctgcagcgaatcagctttcgctgccgaa 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 cgaaattgagttgtctgcagcgaa 90
||||||||||||||||| ||||||
Sbjct: 71 cgaaattgagttgtctgtagcgaa 94
>52815_ptc-miRf10993-akr:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 gttgtctgcagcgaaccagttttcgctgccgaa 108
||||||||||||||| ||| |||||||||||||
Sbjct: 42 gttgtctgcagcgaatcagctttcgctgccgaa 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 cgaaattgagttgtctgcagcgaa 90
||||||||||||||||| ||||||
Sbjct: 71 cgaaattgagttgtctgtagcgaa 94
>54190_ptc-miRf12368-akr:pmrd
Length = 143
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gttcagcagcgaaattgtgattcgctgccgaa 32
|||| |||||||| ||||||||||||||||||
Sbjct: 89 gttctgcagcgaagttgtgattcgctgccgaa 58
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 gcagcgaaattgtgattcgctgccgaaactg 36
|||||||| ||| ||||||||||||||||||
Sbjct: 45 gcagcgaatttgcgattcgctgccgaaactg 15
>54063_ptc-miRf12241-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 70 aattgagttgtctgcagcgaaccagttttcgctgccgaat 109
||||| |||| |||||||||| |||||||||||||||||
Sbjct: 77 aattgtgttgcctgcagcgaatgagttttcgctgccgaat 38
>52234_ptc-miRf10412-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 tgtctgcagcgaaccagttttcgctgccgaat 109
|||| |||||||| ||||||||||||||||||
Sbjct: 37 tgtccgcagcgaatcagttttcgctgccgaat 68
>54142_ptc-miRf12320-akr:pmrd
Length = 75
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gttcagcagcgaaattgtgattcgctgccgaaact 35
|||| |||||||| ||||||||||||||| |||||
Sbjct: 41 gttctgcagcgaatttgtgattcgctgccaaaact 75
>53971_ptc-miRf12149-akr:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 20 attcgctgccgaaactgtgtcggctgcagtgaattaacattcgatgtcgaaattgagttg 79
||||||||| |||| ||||| || ||| |||| ||||||| ||||||||||| ||||
Sbjct: 17 attcgctgctgaaattgtgttggtcacagcgaatcaacattcactgtcgaaattgtgttg 76
Query: 80 tctgcagcgaa 90
||| |||||||
Sbjct: 77 tctacagcgaa 87
>53008_ptc-miRf11186-akr:pmrd
Length = 166
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 64 tgtcgaaattgagttgtctgcagcgaa 90
|||||||| ||||||||||||||||||
Sbjct: 36 tgtcgaaactgagttgtctgcagcgaa 10
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 ttgtgattcgctgccgaaact 35
|||||||||||||||||||||
Sbjct: 162 ttgtgattcgctgccgaaact 142
Score = 40.1 bits (20), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 58 attcgatgtcgaaattgagttgtctgcagcgaaccagttttcgctgccgaat 109
||||| || ||||| | |||||||||||||||| || ||||||||| ||||
Sbjct: 157 attcgctgccgaaactaagttgtctgcagcgaattagctttcgctgcggaat 106
>52237_ptc-miRf10415-akr:pmrd
Length = 147
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 67 cgaaattgagttgtctgcagcgaaccagttttcgctgccgaat 109
|||||||||||||| ||||||||| ||| |||||||| ||||
Sbjct: 105 cgaaattgagttgtttgcagcgaattagtattcgctgctgaat 147
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaa 32
|||||||| ||||||||||||||||||
Sbjct: 39 gcagcgaatttgtgattcgctgccgaa 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 45 gcagtgaattaacattcgatgtcgaaattgagttgtctgcagcgaa 90
|||| |||||| |||||| || ||||| |||||||||||||||||
Sbjct: 1 gcagcgaattagcattcgctgccgaaacggagttgtctgcagcgaa 46
>52615_ptc-miRf10793-akr:pmrd
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aattgtgattcgctgccgaaac 34
||||||||||||||||||||||
Sbjct: 15 aattgtgattcgctgccgaaac 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 74 gagttgtctgcagcgaaccagttttcgctgcc 105
||||||||||| ||||| ||| ||||||||||
Sbjct: 38 gagttgtctgccgcgaatcagctttcgctgcc 69
>54325_ptc-miRf12503-akr:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||| || |||||||||| ||||| | ||||||| ||||||| |||||
Sbjct: 10 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattcg 66
>53719_ptc-miRf11897-akr:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||| || |||||||||| ||||| | ||||||| ||||||| |||||
Sbjct: 10 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattcg 66
>53323_ptc-miRf11501-akr:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 gcagcgaaccagttttcgctgccga 107
|||||||| ||||||||||||||||
Sbjct: 4 gcagcgaagcagttttcgctgccga 28
>53007_ptc-miRf11185-akr:pmrd
Length = 63
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 81 ctgcagcgaaccagttttcgctgccgaat 109
|||||||||| ||||||||||||| ||||
Sbjct: 1 ctgcagcgaatcagttttcgctgctgaat 29
>52642_ptc-miRf10820-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||| || |||||||||| ||||| | ||||||| ||||||| |||||
Sbjct: 40 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattcg 96
>52621_ptc-miRf10799-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||| || |||||||||| ||||| | ||||||| ||||||| |||||
Sbjct: 6 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattcg 62
>52552_ptc-miRf10730-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||| || |||||||||| ||||| | ||||||| ||||||| |||||
Sbjct: 6 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattcg 62
>52445_ptc-miRf10623-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||| || |||||||||| ||||| | ||||||| ||||||| |||||
Sbjct: 6 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattcg 62
>52308_ptc-miRf10486-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
||||||||||| || |||||||||| ||||| | ||||||| ||||||| |||||
Sbjct: 6 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattcg 62
>52533_ptc-miRf10711-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattc 61
||||||||||| || |||||||||| ||||| | ||||||| ||||||| ||||
Sbjct: 6 gcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatattc 61
