miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54036_ptc-miRf12214-akr:pmrd
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 47 tcggtttggttgtttattttggtttaaaaccggaccgaaccggaaatgctc 97
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tcggtctggttgtttattttggtttaaaaccggaccgaaccggaaatgctc 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ccggttttcggttcggttcggttc 29
||||||||||||||||||||||||
Sbjct: 1 ccggttttcggttcggttcggttc 24
>53555_ptc-miRf11733-akr:pmrd
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 47 tcggtttggttgtttattttggtttaaaaccggaccgaaccggaaatgctc 97
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tcggtctggttgtttattttggtttaaaaccggaccgaaccggaaatgctc 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ccggttttcggttcggttcggttc 29
||||||||||||||||||||||||
Sbjct: 1 ccggttttcggttcggttcggttc 24
>54306_ptc-miRf12484-akr:pmrd
Length = 100
Score = 89.7 bits (45), Expect = 4e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 47 tcggtttggttgtttattttggtttaaaaccggaccgaaccggaaatgctcag 99
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 48 tcggtttggttgtttattttggtttaaaactggaccgaaccggaaatgttcag 100
>51832_ptc-miRf10010-akr:pmrd
Length = 97
Score = 69.9 bits (35), Expect = 3e-13
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 48 cggtttggttgtttattttggtttaaaaccggaccgaaccggaaatgctca 98
|||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct: 51 cggtttggttgtttattttggtccaaaaccggaccgaactgaaaatgctca 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 ccggttttcggttcggttcggttc 29
||||||||||||||||||||||||
Sbjct: 93 ccggttttcggttcggttcggttc 70
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgagccggttttcggttcggttcggttc 29
|||| ||||||||||||||||||||||||
Sbjct: 39 ttgaaccggttttcggttcggttcggttc 67
>52550_ptc-miRf10728-akr:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 ttttggtttaaaaccggaccgaaccgga 90
|||||| |||||||||||||||||||||
Sbjct: 110 ttttgggttaaaaccggaccgaaccgga 137
>53686_ptc-miRf11864-akr:pmrd
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 ttgagccggttttcggttcggttcggttc 29
|||| ||||||||||||||| ||||||||
Sbjct: 35 ttgaaccggttttcggttcgattcggttc 63
