miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52513_ptc-miRf10691-akr:pmrd
Length = 128
Score = 52.0 bits (26), Expect = 8e-08
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 10 ggtctgacatgtttgtcagacctgcgttaccttggacttggctaaatgtcaagtccaa 67
|||||||||||||||||| || ||||| ||||||||||||| | |||||||||||
Sbjct: 75 ggtctgacatgtttgtcaaactcacgttatcttggacttggctgacagtcaagtccaa 18
>53889_ptc-miRf12067-akr:pmrd
Length = 145
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 agtgccttgggtctgacatgtttgtca 27
|||| ||||||||||||||||||||||
Sbjct: 126 agtgtcttgggtctgacatgtttgtca 100
>53741_ptc-miRf11919-akr:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agtgccttgggtctgacatgtttgtcagacc 31
||||||||||| ||| |||||||||||||||
Sbjct: 60 agtgccttgggactggcatgtttgtcagacc 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 54 aatgtcaagtccaattaccttgggtttgacatgtttgtcagaccca 99
||||||||| |||| | ||||||| || |||||||||||||||||
Sbjct: 47 aatgtcaagcccaagtgccttgggactggcatgtttgtcagaccca 92
>51994_ptc-miRf10172-akr:pmrd
Length = 143
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 agtgccttgggtctgacatgtttgtca 27
|||| ||||||||||||||||||||||
Sbjct: 19 agtgtcttgggtctgacatgtttgtca 45
>51993_ptc-miRf10171-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 agtgccttgggtctgacatgtttgtca 27
|||| ||||||||||||||||||||||
Sbjct: 13 agtgtcttgggtctgacatgtttgtca 39
>52849_ptc-miRf11027-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 34 cgttaccttggacttggctaaatgtcaagtccaattaccttgggtttgacatgtttgtca 93
||||| ||||||||||||| | ||||| ||||| | |||||||| | |||||||| ||
Sbjct: 33 cgttagcttggacttggctgactgtcagatccaagtgccttgggtctaacatgtttacca 92
Query: 94 gacccacatt 103
|||| |||||
Sbjct: 93 gacctacatt 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 agtgccttgggtctgacatgtttgtcagacct 32
|||||||||||||| |||||||| |||||||
Sbjct: 66 agtgccttgggtctaacatgtttaccagacct 97
>51949_ptc-miRf10127-akr:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 34 cgttaccttggacttggctaaatgtcaagt 63
|||||| ||||||||||||||||| |||||
Sbjct: 35 cgttacattggacttggctaaatgccaagt 6
>52994_ptc-miRf11172-akr:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 agtgccttgggtctgacatgtttgtcaga 29
||||| |||||||||||||||||| ||||
Sbjct: 102 agtgcattgggtctgacatgtttggcaga 74
>51992_ptc-miRf10170-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 8e-05
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 39 ccttggacttggctaaatgtcaagtccaattaccttgggtttgacatgtttgtcagaccc 98
|||||||||| |||||||| ||||||||| | |||||| || |||| ||||||||||
Sbjct: 68 ccttggactttgctaaatgccaagtccaagcatattgggtctggcatgaatgtcagaccc 127
Query: 99 a 99
|
Sbjct: 128 a 128
