miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52638_ptc-miRf10816-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 5 ggccaaaacttttcatccgaccgttggatcg 35
||||| ||||||| |||||||||||||||||
Sbjct: 40 ggccataacttttgatccgaccgttggatcg 10
>52216_ptc-miRf10394-akr:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 ggccaaaacttttcatccgaccgttggatcg 35
||||| ||||||| |||||||||||||||||
Sbjct: 69 ggccataacttttgatccgaccgttggatcg 99
>53375_ptc-miRf11553-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 gccaaaacttttcatccgaccgttggatcg 35
|||| ||||||| |||||||||||||||||
Sbjct: 31 gccacaacttttgatccgaccgttggatcg 2
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 aacttttcatccgaccgttggatcg 35
||||||| |||||||||||||||||
Sbjct: 64 aacttttgatccgaccgttggatcg 88
>53374_ptc-miRf11552-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 gccaaaacttttcatccgaccgttggatcg 35
|||| ||||||| |||||||||||||||||
Sbjct: 35 gccacaacttttgatccgaccgttggatcg 6
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 aacttttcatccgaccgttggatcg 35
||||||| |||||||||||||||||
Sbjct: 68 aacttttgatccgaccgttggatcg 92
