miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 15 gtgcgcgaggtggagaagcagggcacgtgc 44
||||||||||||||||||||||||||||||
Sbjct: 1 gtgcgcgaggtggagaagcagggcacgtgc 30
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 17 gcgcgaggtggagaagcagggcacgtgc 44
||||||||||||||||||||||||||||
Sbjct: 3 gcgcgaggtggagaagcagggcacgtgc 30
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 154 gatgcatgtgcccttcttctccatcgtgca 183
||||||||||||||||||||||| ||||||
Sbjct: 148 gatgcatgtgcccttcttctccaccgtgca 177
>RF00647;MIR164;AACV01012402.1/16189-16008 39947:Oryza sativa
Japonica Group
Length = 182
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 154 gatgcatgtgcccttcttctccatcgtgca 183
||||||||||||||||||||||| ||||||
Sbjct: 150 gatgcatgtgcccttcttctccaccgtgca 179
>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
Length = 80
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ggtggagaagcagggcacgtgc 44
||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ggtggagaagcagggcacgtgc 44
||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgc 30
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ggtggagaagcagggcacgtgc 44
||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgc 30
