miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q5E9L0|CLD10_BOVIN Claudin-10 OS=Bos taurus GN=CLDN10 PE=2 SV=1
Length = 231
Score = 96.7 bits (239), Expect = 4e-20
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC 138
GFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC
Sbjct: 90 GFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC 135
>sp|P78369|CLD10_HUMAN Claudin-10 OS=Homo sapiens GN=CLDN10 PE=1
SV=2
Length = 228
Score = 95.1 bits (235), Expect = 1e-19
Identities = 45/46 (97%), Positives = 45/46 (97%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC 138
GFFGSIFAL GMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC
Sbjct: 90 GFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC 135
>sp|Q9Z0S6|CL10A_MOUSE Claudin-10A OS=Mus musculus GN=Cldn10a PE=2
SV=1
Length = 231
Score = 93.6 bits (231), Expect = 3e-19
Identities = 44/46 (95%), Positives = 45/46 (97%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC 138
GFFGSIFAL GMKCTKVGGSD+AKAKIACLAGIVFILSGLCSMTGC
Sbjct: 90 GFFGSIFALFGMKCTKVGGSDQAKAKIACLAGIVFILSGLCSMTGC 135
>sp|Q5R8E5|CLD10_PONAB Claudin-10 OS=Pongo abelii GN=CLDN10 PE=2
SV=1
Length = 228
Score = 92.0 bits (227), Expect = 1e-18
Identities = 44/46 (95%), Positives = 44/46 (95%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC 138
G FGSIFAL GMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC
Sbjct: 90 GSFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGC 135
>sp|Q9Z261|CLD7_MOUSE Claudin-7 OS=Mus musculus GN=Cldn7 PE=1 SV=1
Length = 211
Score = 52.8 bits (125), Expect = 7e-07
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKA-KAKIACLAGIVFILSGLCSMTGC 138
GF A +GMKCT+ GG DKA KA+IA GIVFI++GL ++ C
Sbjct: 91 GFLAMFVATMGMKCTRCGGDDKAKKARIAMTGGIVFIVAGLAALVAC 137
>sp|Q3B7N4|CLD7_BOVIN Claudin-7 OS=Bos taurus GN=CLDN7 PE=2 SV=1
Length = 211
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKA-KAKIACLAGIVFILSGLCSMTGC 138
GF + A +GMKCT GG DK KA+IA GI+FIL+GL ++ C
Sbjct: 91 GFLATFVATMGMKCTNCGGDDKVKKARIAMTGGIIFILAGLAALIAC 137
>sp|Q9Z1L1|CLD7_RAT Claudin-7 OS=Rattus norvegicus GN=Cldn7 PE=1
SV=2
Length = 211
Score = 50.8 bits (120), Expect = 3e-06
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKA-KAKIACLAGIVFILSGLCSMTGC 138
GF A +GMKCT+ GG DK KA+IA GI+FI++GL ++ C
Sbjct: 91 GFLAMFVATMGMKCTRCGGDDKVKKARIAMTGGIIFIVAGLAALVAC 137
>sp|O95471|CLD7_HUMAN Claudin-7 OS=Homo sapiens GN=CLDN7 PE=1 SV=4
Length = 211
Score = 49.7 bits (117), Expect = 6e-06
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDKA-KAKIACLAGIVFILSGLCSMTGC 138
GF A +GMKCT+ GG DK KA+IA GI+FI++GL ++ C
Sbjct: 91 GFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVAC 137
>sp|Q8N6F1|CLD19_HUMAN Claudin-19 OS=Homo sapiens GN=CLDN19 PE=1
SV=2
Length = 224
Score = 48.9 bits (115), Expect = 1e-05
Identities = 21/45 (46%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSDK-AKAKIACLAGIVFILSGLCSMT 132
GF + +++GMKCT+VG S+ AK ++A G +FIL+GLC++T
Sbjct: 91 GFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGALFILAGLCTLT 135
>sp|Q9ET38|CLD19_MOUSE Claudin-19 OS=Mus musculus GN=Cldn19 PE=2
SV=3
Length = 224
Score = 48.1 bits (113), Expect = 2e-05
Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSMT 132
GF + +++GMKCT+VG S+ AK+++A G +F+L+GLC++T
Sbjct: 91 GFVAMVLSVVGMKCTRVGDSNPTAKSRVAISGGALFLLAGLCTLT 135
>sp|Q5QT56|CLD19_RAT Claudin-19 OS=Rattus norvegicus GN=Cldn19 PE=2
SV=1
Length = 224
Score = 47.8 bits (112), Expect = 2e-05
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSMT 132
GF + +++GMKCT+VG S+ AK ++A G +F+L+GLC++T
Sbjct: 91 GFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLT 135
>sp|P56746|CLD15_HUMAN Claudin-15 OS=Homo sapiens GN=CLDN15 PE=1
SV=1
Length = 228
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSM 129
GF G + + G++CT +GG + KAK+A AG + IL+G+C M
Sbjct: 89 GFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGM 132
>sp|P56857|CLD18_MOUSE Claudin-18 OS=Mus musculus GN=Cldn18 PE=1
SV=1
Length = 264
Score = 43.9 bits (102), Expect = 3e-04
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGG-SDKAKAKIACLAGIVFILSGLCSMTG 135
G G + ++ +KC ++G D AKAK+ +GI+FI+SG+C++ G
Sbjct: 90 GVIGILVSIFALKCIRIGSMDDSAKAKMTLTSGILFIISGICAIIG 135
>sp|Q2KIY2|CLD15_BOVIN Claudin-15 OS=Bos taurus GN=CLDN15 PE=2 SV=1
Length = 235
Score = 43.9 bits (102), Expect = 3e-04
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSM 129
GF G ++G++CT +GG + K K+A AG + IL+G+C M
Sbjct: 89 GFLGLFLGMVGLRCTNIGGLELSRKTKLAATAGALHILAGICGM 132
>sp|Q9Z0S5|CLD15_MOUSE Claudin-15 OS=Mus musculus GN=Cldn15 PE=2
SV=2
Length = 227
Score = 43.5 bits (101), Expect = 4e-04
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSM 129
GF G ++G++CT VG D KAK+ +AG + IL+G C M
Sbjct: 89 GFLGLFLGMVGLRCTNVGNMDLSKKAKLLAIAGTLHILAGACGM 132
>sp|P56856|CLD18_HUMAN Claudin-18 OS=Homo sapiens GN=CLDN18 PE=1
SV=1
Length = 261
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 GFFGSIFALIGMKCTKVGG-SDKAKAKIACLAGIVFILSGLCSMTG 135
G G + ++ +KC ++G D AKA + +GI+FI+SGLC++ G
Sbjct: 90 GAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIAG 135
>sp|Q0VCN0|CLD18_BOVIN Claudin-18 OS=Bos taurus GN=CLDN18 PE=2 SV=1
Length = 261
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 10 GSIFALIGMKCTKVGG-SDKAKAKIACLAGIVFILSGLCSMTG 135
G + A+ +KC ++G D AKAK+ +GI+FI++GLC++ G
Sbjct: 93 GLLVAIFALKCIRMGNMDDSAKAKMTLTSGIMFIIAGLCAIAG 135
