miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54630_sof-miR159c:pmrd
Length = 238
Score = 250 bits (126), Expect = 3e-67
Identities = 165/178 (92%)
Strand = Plus / Plus
Query: 8 atcgaagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggtt 67
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 40 atcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggtt 99
Query: 68 catggatacctatctggtgcagaaatgttccatgttcacctgcacttgcatgggtgtgca 127
||||||| ||| |||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct: 100 catggatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgca 159
Query: 128 tgacccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 160 tgacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 217
>54643_sof-miR319b:pmrd
Length = 176
Score = 242 bits (122), Expect = 8e-65
Identities = 161/174 (92%)
Strand = Plus / Plus
Query: 12 aagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatg 71
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 72 gatacctatctggtgcagaaatgttccatgttcacctgcacttgcatgggtgtgcatgac 131
||| ||| |||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 61 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 120
Query: 132 ccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 121 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 174
>54403_sbi-miR159b:pmrd
Length = 253
Score = 242 bits (122), Expect = 8e-65
Identities = 161/174 (92%)
Strand = Plus / Plus
Query: 12 aagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatg 71
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 59 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 118
Query: 72 gatacctatctggtgcagaaatgttccatgttcacctgcacttgcatgggtgtgcatgac 131
||| ||| |||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 119 gatgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgac 178
Query: 132 ccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 179 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
>54933_zma-miR159d:pmrd
Length = 217
Score = 224 bits (113), Expect = 2e-59
Identities = 164/180 (91%), Gaps = 2/180 (1%)
Strand = Plus / Plus
Query: 8 atcgaagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggtt 67
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 17 atcgaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggtt 76
Query: 68 catggatacctatctggtgcagaaatgttc--catgttcacctgcacttgcatgggtgtg 125
||||||||||| |||||||||| |||| | ||| |||||||||||||||||||||||
Sbjct: 77 catggatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtg 136
Query: 126 catgacccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
|||||||||||||| ||||| |||| |||||| |||||||| ||||||||||||||||||
Sbjct: 137 catgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
>54932_zma-miR159c:pmrd
Length = 217
Score = 224 bits (113), Expect = 2e-59
Identities = 164/180 (91%), Gaps = 2/180 (1%)
Strand = Plus / Plus
Query: 8 atcgaagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggtt 67
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 17 atcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggtt 76
Query: 68 catggatacctatctggtgcagaaatgttccatgttcac--ctgcacttgcatgggtgtg 125
||||||||||| |||||||||| |||| | || |||| |||||||||||||||||||
Sbjct: 77 catggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtg 136
Query: 126 catgacccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||| ||| ||| |||||| |||||||| ||||||||||||||||||
Sbjct: 137 catgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 196
>54936_zma-miR159g:pmrd
Length = 180
Score = 218 bits (110), Expect = 1e-57
Identities = 161/177 (90%), Gaps = 2/177 (1%)
Strand = Plus / Plus
Query: 11 gaagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcat 70
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 60
Query: 71 ggatacctatctggtgcagaaatgttccatgttcac--ctgcacttgcatgggtgtgcat 128
|||||||| |||||||||| |||| | || |||| ||||||||||||||||||||||
Sbjct: 61 ggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcat 120
Query: 129 gacccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
|||||||||||||| ||| ||| |||||| |||||||| ||||||||||||||||||
Sbjct: 121 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 177
>55054_zma-miR319m:pmrd
Length = 178
Score = 216 bits (109), Expect = 5e-57
Identities = 160/176 (90%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 12 aagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatg 71
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 72 gatacctatctggtgcagaaatgttccatgttcac--ctgcacttgcatgggtgtgcatg 129
||||||| |||||||||| |||| | || |||| |||||||||||||||||||||||
Sbjct: 61 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 120
Query: 130 acccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||| ||| ||| |||||| |||||||| ||||||||||||||||||
Sbjct: 121 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 176
>54935_zma-miR159f:pmrd
Length = 181
Score = 180 bits (91), Expect = 3e-46
Identities = 158/178 (88%), Gaps = 3/178 (1%)
Strand = Plus / Plus
Query: 11 gaagagctcccttcgatccaatccagg-agggggagtggtcggatgcagctgccggttca 69
||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttca 60
Query: 70 tggatacctatctggtgcagaaatgttccatgttcacct--gcacttgcatgggtgtgca 127
||||||| | |||||||||| |||| | | |||||| |||||||||||||||||||
Sbjct: 61 tggatacttctctggtgcagcaatggccgcagctcacctctgcacttgcatgggtgtgca 120
Query: 128 tgacccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||| ||| ||| |||||| |||||||| ||||||||||||||||||
Sbjct: 121 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 178
>48824_osa-miR159f:pmrd
Length = 188
Score = 115 bits (58), Expect = 1e-26
Identities = 144/172 (83%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 14 gagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatgga 73
|||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 74 tacctatctggtgcagaaatgttccatgttcacctgcacttgcatgggtgtgcatgaccc 133
||||| | |||| |||| || | ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgt----cgtaggcttgcacttgcatgggtttgcatgaccc 124
Query: 134 gggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||| |||||| || || ||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>48821_osa-miR159c:pmrd
Length = 197
Score = 95.6 bits (48), Expect = 1e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 106 cctgcacttgcatgggtgtgcatgacccgggagatgaacccaccagcatcttcccctcgt 165
||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |
Sbjct: 106 cctgcacttgcatgggtttgcatgacccgggagatgaacccaccattgtcttcctctatt 165
Query: 166 gtttggattgaagggagctc 185
| ||||||||||||||||||
Sbjct: 166 gattggattgaagggagctc 185
>48823_osa-miR159e:pmrd
Length = 191
Score = 89.7 bits (45), Expect = 7e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 gaagagctccctt-cgatccaatccaggagggggagtggtcggatgcagctgccggttca 69
||||||||||||| ||||||||| |||||| || |||||| |||||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 70 tggatacct 78
|||||||||
Sbjct: 70 tggatacct 78
>48822_osa-miR159d:pmrd
Length = 189
Score = 89.7 bits (45), Expect = 7e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 14 gagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatgga 73
||||||| ||||||||||| |||||| || |||||| |||||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 74 tacct 78
|||||
Sbjct: 73 tacct 77
>54931_zma-miR159b:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 tgtttggattgaagggagctc 185
|||||||||||||||||||||
Sbjct: 180 tgtttggattgaagggagctc 200
>54777_vvi-miR159c:pmrd
Length = 190
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 tgtttggattgaagggagctc 185
|||||||||||||||||||||
Sbjct: 158 tgtttggattgaagggagctc 178
>54673_tae-miR159a:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 tgtttggattgaagggagctc 185
|||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctc 172
>48657_hvv-miR159b:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 tgtttggattgaagggagctc 185
|||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctc 172
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 gtttggattgaagggagctc 185
||||||||||||||||||||
Sbjct: 194 gtttggattgaagggagctc 213
