miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 242 bits (122), Expect = 2e-63
Identities = 161/174 (92%)
Strand = Plus / Plus
Query: 12 aagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatg 71
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70
Query: 72 gatacctatctggtgcagaaatgttccatgttcacctgcacttgcatgggtgtgcatgac 131
||| ||| |||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 71 gatgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgac 130
Query: 132 ccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 131 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 184
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 224 bits (113), Expect = 4e-58
Identities = 164/180 (91%), Gaps = 2/180 (1%)
Strand = Plus / Plus
Query: 8 atcgaagagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggtt 67
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 7 atcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggtt 66
Query: 68 catggatacctatctggtgcagaaatgttccatgttcac--ctgcacttgcatgggtgtg 125
||||||||||| |||||||||| |||| | || |||| |||||||||||||||||||
Sbjct: 67 catggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtg 126
Query: 126 catgacccgggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||| ||| ||| |||||| |||||||| ||||||||||||||||||
Sbjct: 127 catgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 186
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 115 bits (58), Expect = 2e-25
Identities = 144/172 (83%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 14 gagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatgga 73
|||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 74 tacctatctggtgcagaaatgttccatgttcacctgcacttgcatgggtgtgcatgaccc 133
||||| | |||| |||| || | ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgt----cgtaggcttgcacttgcatgggtttgcatgaccc 124
Query: 134 gggagatgaacccaccagcatcttcccctcgtgtttggattgaagggagctc 185
||||||||||||||||| |||||| || || ||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 95.6 bits (48), Expect = 2e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 106 cctgcacttgcatgggtgtgcatgacccgggagatgaacccaccagcatcttcccctcgt 165
||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |
Sbjct: 106 cctgcacttgcatgggtttgcatgacccgggagatgaacccaccattgtcttcctctatt 165
Query: 166 gtttggattgaagggagctc 185
| ||||||||||||||||||
Sbjct: 166 gattggattgaagggagctc 185
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 89.7 bits (45), Expect = 1e-17
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 14 gagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatgga 73
||||||| ||||||||||| |||||| || |||||| |||||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 74 tacct 78
|||||
Sbjct: 73 tacct 77
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 89.7 bits (45), Expect = 1e-17
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 gaagagctccctt-cgatccaatccaggagggggagtggtcggatgcagctgccggttca 69
||||||||||||| ||||||||| |||||| || |||||| |||||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 70 tggatacct 78
|||||||||
Sbjct: 70 tggatacct 78
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 81.8 bits (41), Expect = 3e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 14 gagctcccttcgatccaatccaggagggggagtggtcggatgcagctgccggttcatgga 73
||||||| ||||||||||| |||||| || |||||| |||||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 74 tacct 78
|||||
Sbjct: 73 tacct 77
