miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 gccccctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccccctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtcccc 61
Query: 61 ttcaaccagctacagcagggct 82
||||||||||||||||||||||
Sbjct: 62 ttcaaccagctacagcagggct 83
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 105 bits (53), Expect = 8e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 6 ctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttcaa 65
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct: 7 ctgctctggctggtcaaacggaaccaagcccgtcttcttcggaggtttggtccccttcaa 66
Query: 66 ccagctacagcag 78
||||||| |||||
Sbjct: 67 ccagctatagcag 79
>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 5 cctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttca 64
||||||||||||||||||| ||||||| | | |||||||| ||||||||||||||| |
Sbjct: 6 cctgctctggctggtcaaagggaaccacggctgtcttccttgaaggtttggtccccttta 65
Query: 65 accagctacagcag 78
||||||||||||||
Sbjct: 66 accagctacagcag 79
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 79.8 bits (40), Expect = 5e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 7 tgctctggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaa 65
|||| |||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 8 tgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaa 67
Query: 66 ccagctac 73
||||||||
Sbjct: 68 ccagctac 75
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 12 tggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaaccagc 70
|||||||||||||||||||||||| | | || ||| ||||||||||||||||||||||||
Sbjct: 13 tggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtccccttcaaccagc 72
Query: 71 tac 73
|||
Sbjct: 73 tac 75
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 ggtttggtccccttcaaccagctac 73
|||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagctac 69
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 gagaggtttggtccccttcaaccagctac 73
||||||||||||||| |||||||||||||
Sbjct: 45 gagaggtttggtccctttcaaccagctac 73
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 ggtttggtccccttcaaccagct 71
|||||||||||||||||||||||
Sbjct: 54 ggtttggtccccttcaaccagct 76
