miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 64
Query: 61 gaagaactgttgccctc 77
|||||||||||||||||
Sbjct: 65 gaagaactgttgccctc 81
>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 60
||||| ||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 5 gagccacagcagttcttcagtggcgagctttatgtcttgtcccagctaaagctgccagtt 64
Query: 61 gaagaactg 69
|||||||||
Sbjct: 65 gaagaactg 73
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 62
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 69
Query: 63 agaactgttg 72
||||||||||
Sbjct: 70 agaactgttg 79
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 11 agttcttcagtggcaagctttatgtcct---gacccagctaaagctgccagttgaagaac 67
||||||||| ||||||||||||||| || | ||||||||||||||||| ||||||||
Sbjct: 15 agttcttcactggcaagctttatgttctcgtgcaccagctaaagctgccagctgaagaac 74
Query: 68 tgttg 72
|||||
Sbjct: 75 tgttg 79
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 56.0 bits (28), Expect = 6e-08
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 7 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 62
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 70
Query: 63 agaactgttg 72
||| ||||||
Sbjct: 71 agagctgttg 80
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 gctaaagctgccagttgaagaactgttg 72
|||||||||||||| |||||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgttg 79
>RF00653;mir-22;AAWZ01029001.1/2472-2561 28377:Anolis carolinensis
(green anole)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 44 agctaaagctgc-cagttgaagaactgttg 72
|||||||||||| |||||||||||||||||
Sbjct: 52 agctaaagctgcgcagttgaagaactgttg 81
>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
(zebrafish)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 taaagctgccagttgaagaactgttg 72
||||||||||||||||||| ||||||
Sbjct: 50 taaagctgccagttgaagagctgttg 75
>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 taaagctgccagttgaagaactgttg 72
||||||||||||||||||| ||||||
Sbjct: 54 taaagctgccagttgaagagctgttg 79
>RF00653;mir-22;BAAF04066287.1/5156-5069 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 gctaaagctgccagttgaagaactg 69
|||||||||||||| ||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactg 76
