miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 141 bits (71), Expect = 2e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 11 ttggggtgaggtagtaggttgtatagtttggggctctgccctgctatgggataactatgc 70
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1 ttggggtgaggtagtaggttgtatagtttggggctctgccctgctttgggataactatac 60
Query: 71 aatctactgtctttcctga 89
|||||||||||||||||||
Sbjct: 61 aatctactgtctttcctga 79
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 109 bits (55), Expect = 7e-24
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 11 ttggggtgaggtagtaggttgtatagtttggggctctgccctgctatgggataactatgc 70
|||||||||||||||||||||||||||||||||||| |||||||| | || ||||||| |
Sbjct: 1 ttggggtgaggtagtaggttgtatagtttggggctccgccctgctgt-ggctaactatac 59
Query: 71 aatctactgtctttcctga 89
|||||||||||||||||||
Sbjct: 60 aatctactgtctttcctga 78
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 ttggggtgaggtagtaggttgtatagtttgggg 43
|||||||||||||||||||||||||||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagtttgggg 33
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcctga 89
||||||||||||||||||||||||||||||
Sbjct: 52 gataactatgcaatctactgtctttcctga 81
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 ttggggtgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 ttggggtgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 gggtgaggtagtaggttgtatagtttgg 41
||||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 gggtgaggtagtaggttgtatagtttgg 41
||||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtttgg 41
|||||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagtttgg 30
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtttgg 41
|||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtttgg 41
|||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtttgg 41
|||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ggggtgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtttg 40
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttg 30
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtttg 40
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttg 30
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtttg 40
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttg 30
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 gggtgaggtagtaggttgtatagttt 39
||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcctga 89
||||||||| ||||||||||||||||||||
Sbjct: 52 gataactatacaatctactgtctttcctga 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 ttggggtgaggtagtaggttgtatagttt 39
||||| |||||||||||||||||||||||
Sbjct: 1 ttgggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 ttggggtgaggtagtaggttgtatagttt 39
||||| |||||||||||||||||||||||
Sbjct: 1 ttgggatgaggtagtaggttgtatagttt 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttc 85
||||||||| ||||||||||||||||
Sbjct: 52 gataactatacaatctactgtctttc 77
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 62 taactatgcaatctactgtctttcctga 89
||||||| ||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcctga 81
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tggggtgaggtagtaggttgtatagttt 39
|||| |||||||||||||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcct 87
||||||||| ||||||||||||||||||
Sbjct: 54 gataactatacaatctactgtctttcct 81
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcct 87
||||||||| ||||||||||||||||||
Sbjct: 52 gataactatacaatctactgtctttcct 79
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcct 87
||||||||| ||||||||||||||||||
Sbjct: 54 gataactatacaatctactgtctttcct 81
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcct 87
||||||||| ||||||||||||||||||
Sbjct: 53 gataactatacaatctactgtctttcct 80
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tggggtgaggtagtaggttgtatagttt 39
|||| |||||||||||||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtt 38
||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggtgaggtagtaggttgtatagtt 38
||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 gggtgaggtagtaggttgtatagt 37
||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagt 27
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 gggtgaggtagtaggttgtatagt 37
||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagt 27
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcc 86
||||||||| |||||||||||||||||
Sbjct: 54 gataactatacaatctactgtctttcc 80
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;AAGJ02034255.1/6675-6598 7668:Strongylocentrotus
purpuratus
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 gtgaggtagtaggttgtatagtttgg 41
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttatatagtttgg 31
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttc 85
||||||||| ||||||||||||||||
Sbjct: 53 gataactatacaatctactgtctttc 78
>RF00027;let-7;CR735130.17/58450-58371 7955:Danio rerio
(zebrafish)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttggg 42
||||||||||| ||||||||||||||
Sbjct: 7 tgaggtagtagtttgtatagtttggg 32
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
