miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52218_ptc-miRf10396-akr:pmrd
Length = 176
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1 gacgcatccgtgtccaactccatgttgggctatggtgcatccgcgcccaaccctatattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gacgcatccgtgtccaactccatgttgggctatggtgcatccgcgcccaaccctatattg 50
Query: 61 ggtcagggacgcgtccatgcccaactccacgttgggctatggtgcgtt 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ggtcagggacgcgtccatgcccaactccacgttgggctatggtgcgtt 2
Score = 58.0 bits (29), Expect = 1e-09
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 1 gacgcatccgtgtccaactccatgttgggctatggtgcatccgcgcccaaccctatattg 60
|||||||||||| ||||||||| |||||| || | | || ||||||||| | | |||
Sbjct: 176 gacgcatccgtgcccaactccaagttgggttaggacgtgtctgcgcccaactccaagttg 117
Query: 61 ggtcagggacgcgtccatgcccaactccacgttgggctatggtgc 105
|| |||||||| ||| || ||||||||| |||||||||||||||
Sbjct: 116 ggctagggacgcatccgtgtccaactccatgttgggctatggtgc 72
>53050_ptc-miRf11228-akr:pmrd
Length = 130
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 ggacgcgtccatgcccaactccacgttggg 96
||||||||||||||||||| ||||||||||
Sbjct: 37 ggacgcgtccatgcccaaccccacgttggg 8
>53049_ptc-miRf11227-akr:pmrd
Length = 147
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 ggacgcgtccatgcccaactccacgttggg 96
||||||||||||||||||| ||||||||||
Sbjct: 46 ggacgcgtccatgcccaaccccacgttggg 17
>53073_ptc-miRf11251-akr:pmrd
Length = 150
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 58 ttgggtcagggacgcgtccatgcccaactccac 90
|||||||||||||||| ||| |||||||||||
Sbjct: 39 ttgggtcagggacgcgaccacacccaactccac 7
>53604_ptc-miRf11782-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 67 ggacgcgtccatgcccaactccacgttgggct 98
|||| |||||| ||||||||||| ||||||||
Sbjct: 86 ggactcgtccacgcccaactccaagttgggct 55
>53057_ptc-miRf11235-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 71 gcgtccatgcccaactccacgttgggct 98
||||||| ||||||| ||||||||||||
Sbjct: 50 gcgtccacgcccaaccccacgttgggct 23
>53056_ptc-miRf11234-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 71 gcgtccatgcccaactccacgttgggct 98
||||||| ||||||| ||||||||||||
Sbjct: 50 gcgtccacgcccaaccccacgttgggct 23
>52985_ptc-miRf11163-akr:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 67 ggacgcgtccatgcccaact 86
||||||||||||||||||||
Sbjct: 10 ggacgcgtccatgcccaact 29
>52984_ptc-miRf11162-akr:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 67 ggacgcgtccatgcccaact 86
||||||||||||||||||||
Sbjct: 22 ggacgcgtccatgcccaact 41
>52885_ptc-miRf11063-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 67 ggacgcgtccatgcccaactccacgttgggct 98
|||| |||||| ||||||||||| ||||||||
Sbjct: 86 ggactcgtccacgcccaactccaagttgggct 55
>52371_ptc-miRf10549-akr:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 67 ggacgcgtccatgcccaact 86
||||||||||||||||||||
Sbjct: 93 ggacgcgtccatgcccaact 74
>52370_ptc-miRf10548-akr:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 67 ggacgcgtccatgcccaact 86
||||||||||||||||||||
Sbjct: 85 ggacgcgtccatgcccaact 66
>51919_ptc-miRf10097-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 67 ggacgcgtccatgcccaactccacgttgggct 98
|||| |||||| ||||||||||| ||||||||
Sbjct: 76 ggactcgtccacgcccaactccaagttgggct 45
