miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53388_ptc-miRf11566-akr:pmrd
Length = 99
Score = 89.7 bits (45), Expect = 4e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 48 tcggtttggttgtttattttggtttaaaactggaccgaaccggaaatgttcag 100
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 47 tcggtttggttgtttattttggtttaaaaccggaccgaaccggaaatgctcag 99
>54036_ptc-miRf12214-akr:pmrd
Length = 99
Score = 81.8 bits (41), Expect = 9e-17
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 47 ttcggtttggttgtttattttggtttaaaactggaccgaaccggaaatg 95
|||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 46 ttcggtctggttgtttattttggtttaaaaccggaccgaaccggaaatg 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ccggttttcggttcggttcggttc 29
||||||||||||||||||||||||
Sbjct: 1 ccggttttcggttcggttcggttc 24
>53555_ptc-miRf11733-akr:pmrd
Length = 99
Score = 81.8 bits (41), Expect = 9e-17
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 47 ttcggtttggttgtttattttggtttaaaactggaccgaaccggaaatg 95
|||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 46 ttcggtctggttgtttattttggtttaaaaccggaccgaaccggaaatg 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ccggttttcggttcggttcggttc 29
||||||||||||||||||||||||
Sbjct: 1 ccggttttcggttcggttcggttc 24
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgaaccggttttcggttcggttcggttc 29
|||||||||||||||||||||||||||||
Sbjct: 39 ttgaaccggttttcggttcggttcggttc 67
>51832_ptc-miRf10010-akr:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 2 tgaaccggttttcggttcggttcggttc 29
||||||||||||||||||||||||||||
Sbjct: 97 tgaaccggttttcggttcggttcggttc 70
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 49 cggtttggttgtttattttggtttaaaactggaccgaac 87
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 51 cggtttggttgtttattttggtccaaaaccggaccgaac 13
>53686_ptc-miRf11864-akr:pmrd
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgaaccggttttcggttcggttcggttc 29
|||||||||||||||||||| ||||||||
Sbjct: 35 ttgaaccggttttcggttcgattcggttc 63
>52550_ptc-miRf10728-akr:pmrd
Length = 142
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 64 ttttggtttaaaactggaccgaaccgga 91
|||||| ||||||| |||||||||||||
Sbjct: 110 ttttgggttaaaaccggaccgaaccgga 137
