miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54321_ptc-miRf12499-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>54251_ptc-miRf12429-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>54236_ptc-miRf12414-akr:pmrd
Length = 61
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 27 ccgacggaatgattccgtcggtata 51
>54186_ptc-miRf12364-akr:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 13 ccgacggaatgattccgtcggtata 37
>54185_ptc-miRf12363-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 1 ccgacggaatgattccgtcggtata 25
>54123_ptc-miRf12301-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>54040_ptc-miRf12218-akr:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 39 ccgacggaatgattccgtcggtata 63
>54039_ptc-miRf12217-akr:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 11 ccgacggaatgattccgtcggtata 35
>54014_ptc-miRf12192-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>53802_ptc-miRf11980-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>53599_ptc-miRf11777-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 66 tatatgccgacggacttattccctcggta 94
||||| |||||||||||||||| ||||||
Sbjct: 36 tatataccgacggacttattccgtcggta 8
>53322_ptc-miRf11500-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>53295_ptc-miRf11473-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 10 ccgacggaatgattccgtcggtata 34
>53294_ptc-miRf11472-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>53273_ptc-miRf11451-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 1 ccgacggaatgattccgtcggtata 25
>53272_ptc-miRf11450-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 10 ccgacggaatgattccgtcggtata 34
>53271_ptc-miRf11449-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>53248_ptc-miRf11426-akr:pmrd
Length = 61
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 27 ccgacggaatgattccgtcggtata 51
>53183_ptc-miRf11361-akr:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 tgccgacggaatgattctgtcggta 33
|||||||||||| ||||||||||||
Sbjct: 6 tgccgacggaataattctgtcggta 30
>53130_ptc-miRf11308-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 10 ccgacggaatgattccgtcggtata 34
>53111_ptc-miRf11289-akr:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 tgccgacggaatgattctgtcggta 33
|||||||||||| ||||||||||||
Sbjct: 6 tgccgacggaataattctgtcggta 30
>53099_ptc-miRf11277-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 12 ccgacggaatgattccgtcggtata 36
>52682_ptc-miRf10860-akr:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 tgccgacggaatgattctgtcggta 33
|||||||||||| ||||||||||||
Sbjct: 8 tgccgacggaataattctgtcggta 32
>52539_ptc-miRf10717-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 100 ccgacggaatgattccgtcggtata 76
>52528_ptc-miRf10706-akr:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 103 ccgacggaatgattccgtcggtata 79
>52444_ptc-miRf10622-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 100 ccgacggaatgattccgtcggtata 76
>52193_ptc-miRf10371-akr:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 98 ccgacggaatgattccgtcggtata 74
>52159_ptc-miRf10337-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 100 ccgacggaatgattccgtcggtata 76
>52137_ptc-miRf10315-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ccgacggaatgattctgtcggtata 35
||||||||||||||| |||||||||
Sbjct: 100 ccgacggaatgattccgtcggtata 76
>54226_ptc-miRf12404-akr:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 45/52 (86%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1 ctgtgaaatgccgacggaatga-ttctgtcggtatagacgtcggtgattgtg 51
|||||||||||||||||| | | || |||||| | ||||||||||||||||
Sbjct: 45 ctgtgaaatgccgacggacttacgtccgtcggtgtggacgtcggtgattgtg 96
>54083_ptc-miRf12261-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ctgtgaaatgccgacggaat 20
||||||||||||||||||||
Sbjct: 76 ctgtgaaatgccgacggaat 95
>53046_ptc-miRf11224-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 cgacggaatgattctgtcggtata 35
|||||||||||||| |||||||||
Sbjct: 9 cgacggaatgattccgtcggtata 32
