miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52651_ptc-miRf10829-akr:pmrd
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 8 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
Query: 68 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
Query: 128 ccaatagtcttggatgtg 145
||||||||||||||||||
Sbjct: 121 ccaatagtcttggatgtg 138
>52364_ptc-miRf10542-akr:pmrd
Length = 140
Score = 244 bits (123), Expect = 2e-65
Identities = 135/139 (97%)
Strand = Plus / Plus
Query: 7 ctatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataata 66
|||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ctatacccaagagtctcgggtttggttgcaacgcctgacctaagagtgatatttataata 60
Query: 67 ttaataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccaga 126
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaataataacattaaacttgcatgacccaagtttaaatgggtctagctgcaataccaga 120
Query: 127 cccaatagtcttggatgtg 145
|||||||||||||||||||
Sbjct: 121 cccaatagtcttggatgtg 139
>53794_ptc-miRf11972-akr:pmrd
Length = 154
Score = 226 bits (114), Expect = 4e-60
Identities = 138/146 (94%)
Strand = Plus / Plus
Query: 7 ctatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataata 66
||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9 ctatatccaagagtctcgggtttgactgcaacgcctgacctaagagtgatatttataata 68
Query: 67 ttaataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccaga 126
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 69 ttaataataacattaaacttgcatgacccaagtttaaatgggtctagctgcaatactaga 128
Query: 127 cccaatagtcttggatgtgagtctgg 152
||||||| ||||||||||| ||||||
Sbjct: 129 cccaataatcttggatgtgggtctgg 154
>52538_ptc-miRf10716-akr:pmrd
Length = 140
Score = 174 bits (88), Expect = 1e-44
Identities = 124/136 (91%)
Strand = Plus / Plus
Query: 7 ctatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataata 66
||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 1 ctatatccaagaatcttgggtttggctgcaacgtctgaccctagagtaatatttataata 60
Query: 67 ttaataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccaga 126
|||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 61 ttaataataacattaaacttgcatgacccaagtttaagtgggcttggctgcaataccaga 120
Query: 127 cccaatagtcttggat 142
||||||| |||||||
Sbjct: 121 cccaataaccttggat 136
>52129_ptc-miRf10307-akr:pmrd
Length = 140
Score = 174 bits (88), Expect = 1e-44
Identities = 124/136 (91%)
Strand = Plus / Plus
Query: 7 ctatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataata 66
||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 1 ctatatccaagaatcttgggtttggctgcaacgtctgaccctagagtaatatttataata 60
Query: 67 ttaataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccaga 126
|||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 61 ttaataataacattaaacttgcatgacccaagtttaagtgggcttggctgcaataccaga 120
Query: 127 cccaatagtcttggat 142
||||||| |||||||
Sbjct: 121 cccaataaccttggat 136
>52158_ptc-miRf10336-akr:pmrd
Length = 139
Score = 172 bits (87), Expect = 5e-44
Identities = 124/135 (91%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 7 ctatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataata 66
|||||||||||| |||||| ||||||| ||||| | |||| |||||| ||||||||||||
Sbjct: 139 ctatacccaagagtcttggatttggctacaacgtc-gacccaagagtaatatttataata 81
Query: 67 ttaataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccaga 126
|| ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 80 tttataataacattaaacttgcatgacccaagtttaagtgggtctaactgcaataccaga 21
Query: 127 cccaatagtcttgga 141
|||||||||||||||
Sbjct: 20 cccaatagtcttgga 6
>53293_ptc-miRf11471-akr:pmrd
Length = 150
Score = 157 bits (79), Expect = 3e-39
Identities = 127/143 (88%)
Strand = Plus / Plus
Query: 2 caaaactatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatattta 61
||||| |||| ||||||| ||||||| || ||||| ||||||||| |||||| ||||||
Sbjct: 1 caaaattatatccaagaaccttgggtctgactgcagcgcctgacccaagagtaatatttt 60
Query: 62 taatattaataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaata 121
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct: 61 taatattaataataatattaaacttgcatgatccaagtttaaatgggtctgattgcaaca 120
Query: 122 ccagacccaatagtcttggatgt 144
|||||| ||| ||||||||||||
Sbjct: 121 ccagactcaagagtcttggatgt 143
>53890_ptc-miRf12068-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 cccaagaatcttgggtttggctgcaac 38
|||||||| ||||||||||||||||||
Sbjct: 27 cccaagaaccttgggtttggctgcaac 1
>53033_ptc-miRf11211-akr:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 cccaagaatcttgggtttggctgcaac 38
|||||||| ||||||||||||||||||
Sbjct: 68 cccaagaaccttgggtttggctgcaac 94
>52907_ptc-miRf11085-akr:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 105 tgggtctagctgcaataccagacccaatagtcttg 139
|||||||||||||||| |||| |||||| ||||||
Sbjct: 60 tgggtctagctgcaatgccaggcccaattgtcttg 94
>52405_ptc-miRf10583-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 cccaagaatcttgggtttggctgcaac 38
|||||||| ||||||||||||||||||
Sbjct: 47 cccaagaaccttgggtttggctgcaac 21
>52404_ptc-miRf10582-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 cccaagaatcttgggtttggctgcaac 38
|||||||| ||||||||||||||||||
Sbjct: 27 cccaagaaccttgggtttggctgcaac 1
