miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01001277.1/85811-85885 3694:Populus
trichocarpa
Length = 75
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1 gcaaaactatacccaagaatcttgggtttggctgcaacgc 40
|||||||||||||||||| |||||||| || |||||||||
Sbjct: 44 gcaaaactatacccaagagtcttgggtctgactgcaacgc 5
>RF00779;MIR474;AC214031.1/18532-18633 3694:Populus trichocarpa
Length = 102
Score = 54.0 bits (27), Expect = 6e-07
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 74 taatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagacccaata 133
||||||||||||||||| |||||||||||| ||| | | ||||||| | || |||||||
Sbjct: 102 taatattaaacttgcataacccaagtttaagtggatgtggctgcaacgctaggcccaata 43
Query: 134 gtcttgg 140
| |||||
Sbjct: 42 gccttgg 36
>RF00779;MIR474;AARH01000415.1/165191-165292 3694:Populus
trichocarpa
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 32 ctgcaacgcctgacctaagagtgatatttat 62
||||||||| |||||||||||| ||||||||
Sbjct: 31 ctgcaacgcttgacctaagagtaatatttat 1
>RF00779;MIR474;AARH01003079.1/85941-85857 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 105 tgggtctagctgcaataccagacccaatagtcttg 139
|||||||||||||||| |||| |||||| ||||||
Sbjct: 38 tgggtctagctgcaatgccaggcccaattgtcttg 4
>RF00779;MIR474;AARH01001618.1/1118-1018 3694:Populus trichocarpa
Length = 101
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 8 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagt 53
||||||||||| ||||||| | |||||||||| ||||| ||||||
Sbjct: 54 tatacccaagagccttgggtctagctgcaacgcttgacccaagagt 9
