miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42537_sbi-MIR169i:mirbase
Length = 169
Score = 335 bits (169), Expect = 6e-93
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 1 gatggagagcccccttttgctagccaagaatgacttgcctatgcatgccctctgttggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggagagcccccttttgctagccaagaatgacttgcctatgcatgccctctgttggca 60
Query: 61 attcctccagccatggagattgcacaaggtgaatttttgcggcatagatgatggatgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcctccagccatggagattgcacaaggtgaatttttgcggcatagatgatggatgcaa 120
Query: 121 tgtggctgcatgggcaggtcttcttggctagccagagtgctctcatcca 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtggctgcatgggcaggtcttcttggctagccagagtgctctcatcca 169
>42757_zma-MIR169o:mirbase
Length = 138
Score = 119 bits (60), Expect = 7e-28
Identities = 123/141 (87%), Gaps = 11/141 (7%)
Strand = Plus / Plus
Query: 21 tagccaagaatgacttgcctatgcatgccctctgttggcaattcc-tcc---agccatgg 76
||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||
Sbjct: 2 tagccaagaatgacttgcctatgcacgccctctgttggcagttccgtccggcagccatgg 61
Query: 77 aga---ttgcacaaggtgaatttttgcggcatagatgatggatgcaatgtggctgcatgg 133
|| ||||||||||||| |||||||||| | ||||||| |||||||||||||| |
Sbjct: 62 cgacggttgcacaaggtgagtttttgcggcgtggatgatg----caatgtggctgcatcg 117
Query: 134 gcaggtcttcttggctagcca 154
|||||||||||||||||||||
Sbjct: 118 gcaggtcttcttggctagcca 138
>41977_osa-MIR169n:mirbase
Length = 177
Score = 79.8 bits (40), Expect = 6e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 116 tgcaatgtggctgcatgggcaggtcttcttggctagccagagtg 159
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 132 tgcaatgtggctgcatgggccggtcttcttggctagccagagtg 175
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tttgctagccaagaatgacttgcctatg 43
|||| |||||||||||||||||||||||
Sbjct: 6 tttggtagccaagaatgacttgcctatg 33
>41978_osa-MIR169o:mirbase
Length = 173
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 116 tgcaatgtggctgcatgggcaggtcttcttggctagccagagtg 159
||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 128 tgcaatgaggctgcatgggccggtcttcttggctagccagagtg 171
Score = 46.1 bits (23), Expect = 8e-06
Identities = 41/46 (89%), Gaps = 2/46 (4%)
Strand = Plus / Plus
Query: 16 tttgctagccaagaatgacttgcctatgc--atgccctctgttggc 59
|||| ||||||||||||||||||||| || ||||||||||||||
Sbjct: 6 tttggtagccaagaatgacttgcctacgcttttgccctctgttggc 51
>41756_bdi-MIR169d:mirbase
Length = 187
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 15 ttttgctagccaagaatgacttgcctatgcatgccctctg 54
||||| |||||||||||||||||||||||| |||||||||
Sbjct: 25 ttttggtagccaagaatgacttgcctatgcttgccctctg 64
Score = 52.0 bits (26), Expect = 1e-07
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 121 tgtggctgcatgggcaggtcttcttggctagccagag-tgctctcatcca 169
||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 125 tgtggttgcatgggtgggtcttcttggctagccagagcggctctcatcca 174
>41757_bdi-MIR169e:mirbase
Length = 164
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 tagccaagaatgacttgcctatgcatgccctc 52
|||||||| ||||||||||| |||||| ||||
Sbjct: 32 tagccaaggatgacttgcctgtgcatgtcctc 63
