miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42563_sbi-MIR319:mirbase
Length = 249
Score = 494 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 1 ctgccgccatggttgtgatatggccggatggaagagagcgtccttcagtccactcagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgccgccatggttgtgatatggccggatggaagagagcgtccttcagtccactcagggg 60
Query: 61 cggtgctagggtcgaattagctgccgactcattcacccacatgccaagcaaacggccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggtgctagggtcgaattagctgccgactcattcacccacatgccaagcaaacggccatg 120
Query: 121 gaaacgagctagctttgcagatgagtgaatgaagcgggaggtaaaagcttcgatctcgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaacgagctagctttgcagatgagtgaatgaagcgggaggtaaaagcttcgatctcgca 180
Query: 181 ccatctttgcttggactgaagggtgctccctcctcccctccttaattgtttactttaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccatctttgcttggactgaagggtgctccctcctcccctccttaattgtttactttaccc 240
Query: 241 atggcgcag 249
|||||||||
Sbjct: 241 atggcgcag 249
>42781_zma-MIR319b:mirbase
Length = 213
Score = 335 bits (169), Expect = 1e-92
Identities = 191/198 (96%), Gaps = 4/198 (2%)
Strand = Plus / Plus
Query: 20 atggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaatta 79
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 atggctggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaatta 67
Query: 80 gctgccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgca 139
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 68 gctgccgactcattcacccacatgccaagcaaacggccatggaaa----ccagctttgca 123
Query: 140 gatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactga 199
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 124 gatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactga 183
Query: 200 agggtgctccctcctccc 217
||||||||||||||||||
Sbjct: 184 agggtgctccctcctccc 201
>42783_zma-MIR319d:mirbase
Length = 212
Score = 323 bits (163), Expect = 4e-89
Identities = 185/192 (96%), Gaps = 4/192 (2%)
Strand = Plus / Plus
Query: 22 ggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9 ggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagc 68
Query: 82 tgccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcaga 141
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 69 tgccgactcattcacccacatgccaagcaaacggccatggaaacg----agcttcgcaga 124
Query: 142 tgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaag 201
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 125 tgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaag 184
Query: 202 ggtgctccctcc 213
||||||||||||
Sbjct: 185 ggtgctccctcc 196
>41995_osa-MIR319b:mirbase
Length = 197
Score = 198 bits (100), Expect = 1e-51
Identities = 172/192 (89%), Gaps = 3/192 (1%)
Strand = Plus / Plus
Query: 26 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 85
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4 ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 63
Query: 86 gactcattcacccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatga 144
|||||||||||||||||||||||||| | | || | ||| ||||| ||||||||
Sbjct: 64 gactcattcacccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatga 122
Query: 145 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggt 204
|||||||||||||||||| || | | ||||||||| || |||||||||||||||||||||
Sbjct: 123 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 181
Query: 205 gctccctcctcc 216
||||||||||||
Sbjct: 182 gctccctcctcc 193
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 58.0 bits (29), Expect = 3e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 31 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 90
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 91 attca 95
|||||
Sbjct: 68 attca 72
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 148 tgcttggactgaagggagctccct 171
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 56.0 bits (28), Expect = 1e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 32 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 91
|||||||| | |||||||||||||| ||| ||| |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 92 ttca 95
||||
Sbjct: 69 ttca 72
>40367_rco-MIR319a:mirbase
Length = 211
Score = 56.0 bits (28), Expect = 1e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 32 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 91
|||||||| | |||||||||||||| ||| || | |||| | |||||||||||||||||
Sbjct: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62
Query: 92 ttca 95
||||
Sbjct: 63 ttca 66
>40703_mtr-MIR319:mirbase
Length = 207
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccct 211
|||||||||||||||||||| |||||||
Sbjct: 162 tctttgcttggactgaagggagctccct 189
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 31 gaagagagcgtccttcagtccactca 56
||||||||| ||||||||||||||||
Sbjct: 17 gaagagagcttccttcagtccactca 42
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gggtcgaattagctgccgactcattca 95
|||| ||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattca 75
>40465_gma-MIR319b:mirbase
Length = 208
Score = 44.1 bits (22), Expect = 5e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 aattagctgccgactcattcacccacatgc 104
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcatccaaatgc 92
>42782_zma-MIR319c:mirbase
Length = 216
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 178 ttggactgaagggtgctccct 198
>42780_zma-MIR319a:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 171 ttggactgaagggtgctccct 191
>42642_tae-MIR319:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccctc 212
|||||||||||||||| ||||||||
Sbjct: 181 tgcttggactgaagggagctccctc 205
>42564_sbi-MIR319b:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 158 ttggactgaagggtgctccct 178
>41994_osa-MIR319a:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggtgctccct 182
>41771_bdi-MIR319b:mirbase
Length = 190
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 159 ttggactgaagggtgctccct 179
>41770_bdi-MIR319:mirbase
Length = 280
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccctc 212
|||||||||||||||| ||||||||
Sbjct: 223 tgcttggactgaagggagctccctc 247
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 32 aagagagcgtccttcagtccactca 56
|||||||| ||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactca 33
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 attagctgccgactcattca 95
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 159 tgcttggactgaagggagctccct 182
>40464_gma-MIR319a:mirbase
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 aattagctgccgactcattca 95
|||||||||||||||||||||
Sbjct: 62 aattagctgccgactcattca 82
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 gcagatgagtgaatgaagcgggag 160
|||||||||||||||| |||||||
Sbjct: 118 gcagatgagtgaatgatgcgggag 141
>40069_ath-MIR319a:mirbase
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 147 tctttgattggactgaagggagctccctc 175
>39858_aly-MIR319a:mirbase
Length = 221
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 170 tctttgattggactgaagggagctccctc 198
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 attagctgccgactcattca 95
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 162 tgcttggactgaagggagctccct 185
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 attagctgccgactcattca 95
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 165 tgcttggactgaagggagctccct 188
>40369_rco-MIR319c:mirbase
Length = 188
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 160 tgcttggactgaagggagctccct 183
>40368_rco-MIR319b:mirbase
Length = 179
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 190 cttggactgaagggtgctccctcc 213
|||||||||||||| |||||||||
Sbjct: 153 cttggactgaagggagctccctcc 176
>40070_ath-MIR319b:mirbase
Length = 172
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 149 tgcttggactgaagggagctccct 172
>39859_aly-MIR319b:mirbase
Length = 246
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 188 tgcttggactgaagggagctccct 211
