miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 394 bits (199), Expect = e-109
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 24 ccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctg 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctg 60
Query: 84 ccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatg 120
Query: 144 agtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaaggg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaaggg 180
Query: 204 tgctccctcctcccctcct 222
|||||||||||||||||||
Sbjct: 181 tgctccctcctcccctcct 199
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 325 bits (164), Expect = 2e-88
Identities = 183/189 (96%), Gaps = 4/189 (2%)
Strand = Plus / Plus
Query: 29 tggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgac 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgac 65
Query: 89 tcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatgagtga 148
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 66 tcattcacccacatgccaagcaaacggccatggaaa----ccagctttgcagatgagtga 121
Query: 149 atgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgctc 208
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 122 atgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctc 181
Query: 209 cctcctccc 217
|||||||||
Sbjct: 182 cctcctccc 190
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 198 bits (100), Expect = 3e-50
Identities = 172/192 (89%), Gaps = 3/192 (1%)
Strand = Plus / Plus
Query: 26 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 85
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3 ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 62
Query: 86 gactcattcacccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatga 144
|||||||||||||||||||||||||| | | || | ||| ||||| ||||||||
Sbjct: 63 gactcattcacccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatga 121
Query: 145 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggt 204
|||||||||||||||||| || | | ||||||||| || |||||||||||||||||||||
Sbjct: 122 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 180
Query: 205 gctccctcctcc 216
||||||||||||
Sbjct: 181 gctccctcctcc 192
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 32 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 91
|||||||| | |||||||||||||| ||| ||| |||| | |||||||||||||||||
Sbjct: 8 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 67
Query: 92 ttca 95
||||
Sbjct: 68 ttca 71
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 32 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 91
|||||||| | |||||||||||||| ||| || | |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 92 ttca 95
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccct 211
|||||||||||||||||||| |||||||
Sbjct: 153 tctttgcttggactgaagggagctccct 180
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 31 gaagagagcgtccttcagtccactca 56
||||||||| ||||||||||||||||
Sbjct: 8 gaagagagcttccttcagtccactca 33
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccct 211
|||||||||||||||||||| |||||||
Sbjct: 160 tctttgcttggactgaagggagctccct 187
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 48.1 bits (24), Expect = 6e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 31 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 90
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gggtcgaattagctgccgactcattca 95
|||| ||||||||||||||||||||||
Sbjct: 48 gggttgaattagctgccgactcattca 74
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 aattagctgccgactcattcacccacatgc 104
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcatccaaatgc 81
