miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33043_rno-mir-3555:mirbase
Length = 120
Score = 180 bits (91), Expect = 1e-46
Identities = 97/99 (97%)
Strand = Plus / Plus
Query: 1 ctgctcaggcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaa 60
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctgctcaggcaggagagcagggaacgaaatccaagtgcagctggaatgctctggagacaa 67
Query: 61 cagctgcttttgggattccgttgcccgctgtccagccat 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cagctgcttttgggattccgttgcccgctgtccagccat 106
>33259_bta-mir-191:mirbase
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 7 aggcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctg 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 aggcaggagagcagggaacgaaatccaagcgcagctggaatgctctggagacaacagctg 32
Query: 67 cttttgggattccgttgcccgctgtccagcc 97
|||||||||||||||||||||||||||||||
Sbjct: 31 cttttgggattccgttgcccgctgtccagcc 1
>27782_mml-mir-191:mirbase
Length = 92
Score = 165 bits (83), Expect = 8e-42
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 7 aggcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctg 66
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 aggcaggagagcaggggacgaaatccaagcgcagctggaatgctctggagacaacagctg 33
Query: 67 cttttgggattccgttgcccgctgtccagcc 97
|||||||||||||||||||||||||||||||
Sbjct: 32 cttttgggattccgttgcccgctgtccagcc 2
>28499_hsa-mir-191:mirbase
Length = 92
Score = 165 bits (83), Expect = 8e-42
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 7 aggcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctg 66
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 aggcaggagagcaggggacgaaatccaagcgcagctggaatgctctggagacaacagctg 33
Query: 67 cttttgggattccgttgcccgctgtccagcc 97
|||||||||||||||||||||||||||||||
Sbjct: 32 cttttgggattccgttgcccgctgtccagcc 2
>30880_ppy-mir-191:mirbase
Length = 92
Score = 165 bits (83), Expect = 8e-42
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 7 aggcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctg 66
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 aggcaggagagcaggggacgaaatccaagcgcagctggaatgctctggagacaacagctg 33
Query: 67 cttttgggattccgttgcccgctgtccagcc 97
|||||||||||||||||||||||||||||||
Sbjct: 32 cttttgggattccgttgcccgctgtccagcc 2
>32777_rno-mir-191:mirbase
Length = 91
Score = 165 bits (83), Expect = 8e-42
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 7 aggcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctg 66
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 91 aggcaggagagcagggaacgaaatccaagtgcagctggaatgctctggagacaacagctg 32
Query: 67 cttttgggattccgttgcccgctgtccagcc 97
|||||||||||||||||||||||||||||||
Sbjct: 31 cttttgggattccgttgcccgctgtccagcc 1
>30265_ptr-mir-191:mirbase
Length = 91
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Minus
Query: 8 ggcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctgc 67
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ggcaggagagcaggggacgaaatccaagcgcagctggaatgctctggagacaacagctgc 32
Query: 68 ttttgggattccgttgcccgctgtccagcc 97
||||||||||||||||||||||||||||||
Sbjct: 31 ttttgggattccgttgcccgctgtccagcc 2
>34019_ssc-mir-191:mirbase
Length = 80
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 13 gagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctgcttttg 72
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 79 gagagcagggaacgaaatccaagtgcagctggaatgctctggagacaacagctgcttttg 20
Query: 73 ggattccgttgcccgctgt 91
|||||||||||||||||||
Sbjct: 19 ggattccgttgcccgctgt 1
>27072_eca-mir-191:mirbase
Length = 74
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 20 gggaacgaaatccaagcgcagctggaatgctctggagacaacagctgcttttgggattcc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gggaacgaaatccaagcgcagctggaatgctctggagacaacagctgcttttgggattcc 11
Query: 80 gttgcccgct 89
||||||||||
Sbjct: 10 gttgcccgct 1
>31908_mmu-mir-191:mirbase
Length = 74
Score = 131 bits (66), Expect = 1e-31
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 20 gggaacgaaatccaagcgcagctggaatgctctggagacaacagctgcttttgggattcc 79
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gggaacgaaatccaagtgcagctggaatgctctggagacaacagctgcttttgggattcc 11
Query: 80 gttgcccgct 89
||||||||||
Sbjct: 10 gttgcccgct 1
>26746_cfa-mir-191:mirbase
Length = 64
Score = 127 bits (64), Expect = 2e-30
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 20 gggaacgaaatccaagcgcagctggaatgctctggagacaacagctgcttttgggattcc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gggaacgaaatccaagcgcagctggaatgctctggagacaacagctgcttttgggattcc 5
Query: 80 gttg 83
||||
Sbjct: 4 gttg 1
>31520_oan-mir-191:mirbase
Length = 114
Score = 127 bits (64), Expect = 2e-30
Identities = 79/84 (94%)
Strand = Plus / Minus
Query: 9 gcaggagagcggggaacgaaatccaagcgcagctggaatgctctggagacaacagctgct 68
|||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 104 gcaggatagcagggaacgaaatccaactgcagctggaatgctctggagacaacagctgct 45
Query: 69 tttgggattccgttgcccgctgtc 92
||||||||||||||||| ||||||
Sbjct: 44 tttgggattccgttgcctgctgtc 21
>27413_mdo-mir-191:mirbase
Length = 74
Score = 123 bits (62), Expect = 3e-29
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 20 gggaacgaaatccaagcgcagctggaatgctctggagacaacagctgcttttgggattcc 79
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gggaacgaaatccaattgcagctggaatgctctggagacaacagctgcttttgggattcc 11
Query: 80 gttgcccgct 89
||||||||||
Sbjct: 10 gttgcccgct 1
>25811_xtr-mir-191:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 57 acaacagctgcttttgggattccgttg 83
|||||||||||||||||||||||||||
Sbjct: 41 acaacagctgcttttgggattccgttg 15
