miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41538_sly-MIR171a:mirbase
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 tgaaacagtaactttgatattggcctggttcactcagacaacaaaatgtaaactatattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaaacagtaactttgatattggcctggttcactcagacaacaaaatgtaaactatattt 60
Query: 61 gaatggttgagttttcgtttttcgtttgattgagccgtgccaatatctcagtttctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaatggttgagttttcgtttttcgtttgattgagccgtgccaatatctcagtttctcttt 120
Query: 121 ca 122
||
Sbjct: 121 ca 122
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 tgaaacagtaactttgatattggcctggttcactcagaca 40
||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 6 tgaaatagtaactgtgatattggcctggttcactcagaca 45
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatct 108
||||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatct 116
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatctcagt 112
||||||||||||||||||||||||||||
Sbjct: 98 tttgattgagccgtgccaatatctcagt 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
>40364_rco-MIR171f:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatctcagt 112
||||||||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatctcagt 111
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcagaca 40
||||||||||||||||||||||||||
Sbjct: 3 tgatattggcctggttcactcagaca 28
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatctca 110
|||||||||||||||||||||||||||
Sbjct: 77 gtttgattgagccgtgccaatatctca 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcagac 39
||||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcagac 29
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatctca 110
|||||||||||||||||||||||||||
Sbjct: 77 gtttgattgagccgtgccaatatctca 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcagac 39
||||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcagac 29
>40322_bra-MIR171e:mirbase
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 ctttgatattggcctggttcactcaga 38
|||||||||||||||||||||||||||
Sbjct: 14 ctttgatattggcctggttcactcaga 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||| ||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctcagt 109
>40290_bna-MIR171f:mirbase
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 ctttgatattggcctggttcactcaga 38
|||||||||||||||||||||||||||
Sbjct: 14 ctttgatattggcctggttcactcaga 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||| ||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctcagt 109
>40060_ath-MIR171a:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 ctttgatattggcctggttcactcaga 38
|||||||||||||||||||||||||||
Sbjct: 13 ctttgatattggcctggttcactcaga 39
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||| ||||||||||||||
Sbjct: 88 tgattgagccgcgccaatatctcagt 113
>39849_aly-MIR171a:mirbase
Length = 198
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 ctttgatattggcctggttcactcaga 38
|||||||||||||||||||||||||||
Sbjct: 53 ctttgatattggcctggttcactcaga 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||| ||||||||||||||
Sbjct: 130 tgattgagccgcgccaatatctcagt 155
>42764_zma-MIR171d:mirbase
Length = 121
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctcagt 107
>42640_tae-MIR171a:mirbase
Length = 130
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatctcagt 114
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||||||||||||||||||
Sbjct: 114 tgattgagccgtgccaatatctcagt 139
>41984_osa-MIR171d:mirbase
Length = 135
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcag 111
|||||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctcag 129
>41177_aqc-MIR171a:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatct 108
|||||||||||||||||||||||||
Sbjct: 77 gtttgattgagccgtgccaatatct 101
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 119 gtttgattgagccgtgccaatatc 142
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatc 87
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 68 gtttgattgagccgtgccaatatc 91
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 69 gtttgattgagccgtgccaatatc 92
>41181_aqc-MIR171e:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 24 gtttgattgagccgtgccaatatc 1
>41180_aqc-MIR171d:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatct 108
||||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatct 105
>40362_rco-MIR171d:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatct 108
||||||||||||||||||||||||
Sbjct: 97 tttgattgagccgtgccaatatct 120
>40360_rco-MIR171b:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 60 gtttgattgagccgtgccaatatc 83
>40318_bra-MIR171a:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 59 gtttgattgagccgtgccaatatc 82
>40305_bol-MIR171a:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 65 gtttgattgagccgtgccaatatc 88
>40289_bna-MIR171e:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatc 87
>40288_bna-MIR171d:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 65 gtttgattgagccgtgccaatatc 88
>40059_ath-MIR170:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 15 tgatattggcctggttcactcaga 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||||| ||||||||||||
Sbjct: 59 tgattgagccgtgtcaatatctcagt 84
>39851_aly-MIR171c:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 gtttgattgagccgtgccaatatc 107
||||||||||||||||||||||||
Sbjct: 71 gtttgattgagccgtgccaatatc 94
>39848_aly-MIR170:mirbase
Length = 212
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 74 tgatattggcctggttcactcaga 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatctcagt 112
||||||||||||| ||||||||||||
Sbjct: 117 tgattgagccgtgtcaatatctcagt 142
>42762_zma-MIR171b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>41983_osa-MIR171c:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>41982_osa-MIR171b:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>41216_crt-MIR171:mirbase
Length = 201
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 159 tttgattgagccgtgccaatatc 181
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatc 97
>41120_tcc-MIR171e:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 119 tttgattgagccgtgccaatatc 141
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatc 97
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>40457_gma-MIR171c:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatc 92
>40359_rco-MIR171a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>40291_bna-MIR171g:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcaga 38
|||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcaga 23
>40062_ath-MIR171c:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatatc 107
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>42769_zma-MIR171i:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 ttgattgagccgtgccaatatc 107
||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatc 85
>42766_zma-MIR171f:mirbase
Length = 155
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 ttgattgagccgtgccaatatc 107
||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatc 135
>42765_zma-MIR171e:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatct 108
||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatct 108
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatct 108
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatct 89
>41985_osa-MIR171e:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatct 108
||||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatct 110
>41890_hvu-MIR171:mirbase
Length = 173
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatct 108
||||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatct 133
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgattgagccgtgccaatatct 108
||||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatct 122
>40697_mtr-MIR171c:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 tttgattgagccgtgccaatat 106
||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99
