miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41543_sly-MIR172b:mirbase
Length = 135
Score = 268 bits (135), Expect = 1e-72
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1 atgtagcatcatcaagattcatacatgaaaattaagaggcaaggttaaatatgtagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtagcatcatcaagattcatacatgaaaattaagaggcaaggttaaatatgtagcttt 60
Query: 61 aatttgaaatgaaaaatataatatatcatgaccatgtctatttatttcaaagtgagaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttgaaatgaaaaatataatatatcatgaccatgtctatttatttcaaagtgagaatc 120
Query: 121 ttgatgatgctgcat 135
|||||||||||||||
Sbjct: 121 ttgatgatgctgcat 135
>41128_tcc-MIR172e:mirbase
Length = 189
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 109 aaagtgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||||||
Sbjct: 143 aaagtgagaatcttgatgatgctgcat 169
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgtagcatcatcaagattca 21
||||||||||||||||||||
Sbjct: 22 tgtagcatcatcaagattca 41
>41400_ptc-MIR172f:mirbase
Length = 161
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 127 aagtgagaatcttgatgatgctgcat 152
>41396_ptc-MIR172b:mirbase
Length = 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 106 aagtgagaatcttgatgatgctgcat 131
>40463_gma-MIR172f:mirbase
Length = 133
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 104 aagtgagaatcttgatgatgctgcat 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 atgtagcatcatcaagattca 21
|||||||||||||||||||||
Sbjct: 5 atgtagcatcatcaagattca 25
>41397_ptc-MIR172c:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 99 tatttatttcaaagtgagaatcttgatgatgctgcat 135
||||| ||| || ||||||||||||||||||||||||
Sbjct: 83 tatttctttgaaggtgagaatcttgatgatgctgcat 119
>41395_ptc-MIR172a:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 gtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||
Sbjct: 97 gtgagaatcttgatgatgctgcat 120
>41233_csi-MIR172a:mirbase
Length = 162
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 agtgagaatcttgatgatgctgca 134
||||||||||||||||||||||||
Sbjct: 111 agtgagaatcttgatgatgctgca 134
>40459_gma-MIR172b:mirbase
Length = 153
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 gtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||
Sbjct: 111 gtgagaatcttgatgatgctgcat 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 atgtagcatcatcaagattca 21
|||||||||||||||||||||
Sbjct: 21 atgtagcatcatcaagattca 41
>42778_zma-MIR172d:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 52 tgagaatcttgatgatgctgcat 74
>42777_zma-MIR172c:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 101 tgagaatcttgatgatgctgcat 123
>42776_zma-MIR172b:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 104 tgagaatcttgatgatgctgcat 126
>42775_zma-MIR172a:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 61 tgagaatcttgatgatgctgcat 83
>42560_sbi-MIR172d:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 66 tgagaatcttgatgatgctgcat 88
>42559_sbi-MIR172c:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcat 119
>42557_sbi-MIR172a:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcat 102
>41993_osa-MIR172d:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcat 111
>41990_osa-MIR172a:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcat 99
>41767_bdi-MIR172a:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcat 119
>41725_ata-MIR172:mirbase
Length = 277
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 207 tgagaatcttgatgatgctgcat 229
>41634_vvi-MIR172d:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcat 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 28 gaatcttgatgatgctgcat 9
>41632_vvi-MIR172b:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 31 tgagaatcttgatgatgctgcat 9
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 tgtagcatcatcaagattca 21
||||||||||||||||||||
Sbjct: 107 tgtagcatcatcaagattca 88
>41631_vvi-MIR172a:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 31 tgagaatcttgatgatgctgcat 9
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 atgtagcatcatcaagattca 21
|||||||||||||||||||||
Sbjct: 100 atgtagcatcatcaagattca 80
>41183_aqc-MIR172a:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 96 tgagaatcttgatgatgctgcat 118
>41125_tcc-MIR172b:mirbase
Length = 160
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 118 tgagaatcttgatgatgctgcat 140
>40458_gma-MIR172a:mirbase
Length = 159
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 118 tgagaatcttgatgatgctgcat 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 atgtagcatcatcaagattca 21
|||||||||||||||||||||
Sbjct: 21 atgtagcatcatcaagattca 41
>40324_bra-MIR172b:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcat 102
>40323_bra-MIR172a:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 85 tgagaatcttgatgatgctgcat 107
>40307_bol-MIR172b:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcat 102
>40306_bol-MIR172a:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 85 tgagaatcttgatgatgctgcat 107
>40064_ath-MIR172b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 69 tgagaatcttgatgatgctgcat 91
>40063_ath-MIR172a:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 76 tgagaatcttgatgatgctgcat 98
>39853_aly-MIR172b:mirbase
Length = 146
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgcat 113
>39852_aly-MIR172a:mirbase
Length = 149
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcat 119
>41542_sly-MIR172a:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gagaatcttgatgatgctgcat 135
||||||||||||||||||||||
Sbjct: 85 gagaatcttgatgatgctgcat 106
>40066_ath-MIR172d:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 86 tgagaatcttgatgatgctgca 107
>40065_ath-MIR172c:mirbase
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 96 tgagaatcttgatgatgctgca 117
>39855_aly-MIR172d:mirbase
Length = 163
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 110 tgagaatcttgatgatgctgca 131
>39854_aly-MIR172c:mirbase
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 96 tgagaatcttgatgatgctgca 117
>40067_ath-MIR172e:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 111 agtgagaatcttgatgatgctgcat 135
|||| ||||||||||||||||||||
Sbjct: 91 agtgggaatcttgatgatgctgcat 115
>39856_aly-MIR172e:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 111 agtgagaatcttgatgatgctgcat 135
|||| ||||||||||||||||||||
Sbjct: 94 agtgggaatcttgatgatgctgcat 118
>42779_zma-MIR172e:mirbase
Length = 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 136 gaatcttgatgatgctgcat 155
>42558_sbi-MIR172b:mirbase
Length = 170
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 151 gaatcttgatgatgctgcat 170
>41991_osa-MIR172b:mirbase
Length = 238
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 209 gaatcttgatgatgctgcat 228
>41768_bdi-MIR172b:mirbase
Length = 254
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 205 gaatcttgatgatgctgcat 224
>41399_ptc-MIR172e:mirbase
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 105 gaatcttgatgatgctgcat 124
>41398_ptc-MIR172d:mirbase
Length = 182
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 154 gaatcttgatgatgctgcat 173
>41234_csi-MIR172b:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 111 agtgagaatcttgatgatgc 130
||||||||||||||||||||
Sbjct: 93 agtgagaatcttgatgatgc 112
>41184_aqc-MIR172b:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 87 gaatcttgatgatgctgcat 106
>41126_tcc-MIR172c:mirbase
Length = 163
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 124 gaatcttgatgatgctgcat 143
