miRNEST 2.0, an integrative microRNA resource :: BLAST
>54628_sof-miR159a:pmrd
Length = 265
Score = 462 bits (233), Expect = e-131
Identities = 259/265 (97%), Gaps = 2/265 (0%)
Strand = Plus / Plus
Query: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 122 tttcgagagggaggagaggagctagactctcatggtggtcgtctttgagataggcttgtg 181
Query: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 182 gtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggag 241
Query: 241 ctcttgcat-ctgatccatccatcc 264
||| ||||| |||||||||||||||
Sbjct: 242 ctc-tgcatcctgatccatccatcc 265
>54629_sof-miR159b:pmrd
Length = 266
Score = 456 bits (230), Expect = e-129
Identities = 260/266 (97%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tttc-gagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttcggagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 181
Query: 180 ggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaagga 239
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 182 ggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 241
Query: 240 gctcttgcat-ctgatccatccatcc 264
|||| ||||| |||| ||||||||||
Sbjct: 242 gctc-tgcatcctgaaccatccatcc 266
>54631_sof-miR159d:pmrd
Length = 265
Score = 438 bits (221), Expect = e-123
Identities = 256/265 (96%), Gaps = 2/265 (0%)
Strand = Plus / Plus
Query: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
|||||||||||||||||||||||||||||||| || |||||||| ||||||| |||||||
Sbjct: 122 tttcgagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttgtg 181
Query: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 182 gtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaagggag 241
Query: 241 ctcttgcat-ctgatccatccatcc 264
||| ||||| |||||||||||||||
Sbjct: 242 ctc-tgcatcctgatccatccatcc 265
>54930_zma-miR159a:pmrd
Length = 246
Score = 159 bits (80), Expect = 1e-39
Identities = 96/100 (96%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 8 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 66
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 68
Query: 67 gctgctcgttcatggttcccactatcctatctcatcatgt 106
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctgctcgttcatggttcccactatcctatctcatcatgt 108
Score = 147 bits (74), Expect = 5e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 159 tcgtctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctgg 218
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 141 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 200
Query: 219 ccgctctttggattgaaaggagctct 244
||||||||||||||||| ||||||||
Sbjct: 201 ccgctctttggattgaagggagctct 226
>51338_pgl-miR159:pmrd
Length = 226
Score = 135 bits (68), Expect = 2e-32
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctc 224
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 225 tttggattgaaaggagctct 244
||||||||||| ||||||||
Sbjct: 206 tttggattgaagggagctct 225
Score = 77.8 bits (39), Expect = 4e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 20 cggagctcctatcattccaatgaagggccgttctgaagggt-ggttccgctgctcgttca 78
|||||||||||||||||||||||| || ||| | |||| ||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 79 tggttcccactatcctatctcat 101
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 99.6 bits (50), Expect = 1e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
||||||||| ||||| |||||||||||| |||| ||| |||||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 157 tggattgaagggagctct 174
Score = 73.8 bits (37), Expect = 6e-14
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggccgttct-gaa-gggtggttccgctgctcgttca 78
||||||||||||||||||||||| || | | || ||| ||||||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 79 tggttcccactatccta 95
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 81.8 bits (41), Expect = 2e-16
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| |||||||| ||||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 224 ctttggattgaaaggagctct 244
||||||||||| ||||||||
Sbjct: 181 gtttggattgaagggagctct 201
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 52 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
>54673_tae-miR159a:pmrd
Length = 177
Score = 79.8 bits (40), Expect = 1e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 79
|||||||||||||||||||||||||| | | ||||||| || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 80 ggttcccactatcctatctc 99
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 60.0 bits (30), Expect = 9e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
|||| |||| |||||||||||||||||| |||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 156 tggattgaagggagctct 173
>54934_zma-miR159e:pmrd
Length = 203
Score = 73.8 bits (37), Expect = 6e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| ||||||| ||||||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 224 ctttggattgaaaggagctct 244
|||||| |||| ||||||||
Sbjct: 181 gtttggagtgaagggagctct 201
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 34 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 86
>48657_hvv-miR159b:pmrd
Length = 174
Score = 71.9 bits (36), Expect = 2e-13
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 79
|||||||||||||||||||||||||| | | ||||||| || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 80 ggttcccactatcctatctc 99
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
Score = 67.9 bits (34), Expect = 4e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
|||||||||||||||||||||||| ||| |||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 156 tggattgaagggagctct 173
>48820_osa-miR159b:pmrd
Length = 188
Score = 69.9 bits (35), Expect = 9e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 15 tgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcg 74
||||| ||||||||| || |||||||||| || ||||||||||| | | |||||| |
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
Query: 75 ttcatggttcccactatcctatctcat 101
||||||||||||||||| |||||||||
Sbjct: 66 ttcatggttcccactattctatctcat 92
Score = 67.9 bits (34), Expect = 4e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
|||||||||||||||||||||||||| | |||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 160 tggattgaagggagctct 177
