miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 236 bits (119), Expect = 1e-61
Identities = 209/236 (88%), Gaps = 6/236 (2%)
Strand = Plus / Plus
Query: 10 ggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgct 69
||||| |||||| |||||||||||||||||||||||||| || | | |||||||||||||
Sbjct: 1 ggattcgaagcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgct 60
Query: 70 gctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtattttcgagag 129
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct: 61 gctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtactctagag-g 119
Query: 130 ggaggagaggagctagactctcacggtggtc-gtctttgagataggcttgtggtttgcat 188
| |||| | ||| || ||| ||| ||||||||||||||||||||||||||||
Sbjct: 120 gcccgagaag----agattcatgtggtcgtcagtctttgagataggcttgtggtttgcat 175
Query: 189 gaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggagctct 244
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 176 gaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggagctct 231
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 147 bits (74), Expect = 9e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 159 tcgtctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctgg 218
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 135 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 194
Query: 219 ccgctctttggattgaaaggagctct 244
||||||||||||||||| ||||||||
Sbjct: 195 ccgctctttggattgaagggagctct 220
Score = 141 bits (71), Expect = 6e-33
Identities = 90/95 (94%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 13 tttgaagcggagctcctatcattccaatgaagggccgttctgaagggt-ggttccgctgc 71
|||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||
Sbjct: 4 tttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgc 63
Query: 72 tcgttcatggttcccactatcctatctcatcatgt 106
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tcgttcatggttcccactatcctatctcatcatgt 98
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 73.8 bits (37), Expect = 1e-12
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 223
||||||| |||||||||||||||||||||| ||||||| ||||||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 224 ctttggattgaaaggagctct 244
|||||| |||| ||||||||
Sbjct: 189 gtttggagtgaagggagctct 209
Score = 65.9 bits (33), Expect = 3e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 42 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 73.8 bits (37), Expect = 1e-12
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 165 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccc-ttgctggccgct 223
||||||| ||| |||||||||||||||||| |||||||| ||||||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 224 ctttggattgaaaggagctct 244
| |||||||||| ||||||||
Sbjct: 195 cgttggattgaagggagctct 215
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 67 gctgctcgttcatggttcccactatcctatctcatca 103
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 67.9 bits (34), Expect = 7e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 167 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 226
|||||||||||||||||||||||||| | |||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 227 tggattgaaaggagctct 244
||||||||| ||||||||
Sbjct: 157 tggattgaagggagctct 174
Score = 61.9 bits (31), Expect = 4e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 51 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcat 101
||||||||||| | | |||||| |||||||||||||||||| |||||||||
Sbjct: 39 tctgaagggtgatacagctgcttgttcatggttcccactattctatctcat 89
