miRNEST 2.0, an integrative microRNA resource :: BLAST
>54648_sof-miR408c:pmrd
Length = 286
Score = 523 bits (264), Expect = e-149
Identities = 281/286 (98%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggctgagagctcagctggtgtcc---tgttgttgctt 237
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 238 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 283
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>54650_sof-miR408e:pmrd
Length = 283
Score = 521 bits (263), Expect = e-149
Identities = 278/283 (98%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcct 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcctgttgttgcttact 240
Query: 241 cccctgcactgcctcttccctggctccccaccgttgcccttgc 283
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 tccctgcactgactcttccctggctccccaccgttgcccttgc 283
>54647_sof-miR408b:pmrd
Length = 286
Score = 515 bits (260), Expect = e-147
Identities = 280/286 (97%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggctgagagctcagctggtgtcc---tgttgttgctt 237
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 238 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 283
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>54649_sof-miR408d:pmrd
Length = 215
Score = 165 bits (83), Expect = 2e-41
Identities = 100/105 (95%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 182 tggtgatggcctgacctgagacggctgagagctcagctggtgtcctg---ttgttgcttc 238
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
Query: 239 ctcccctgcactgcctcttccctggctccccaccgttgcccttgc 283
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
Score = 99.6 bits (50), Expect = 1e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 98 atttctgtttgcttgctcacaaaacg 123
||||| ||||||||||||||||||||
Sbjct: 69 atttccgtttgcttgctcacaaaacg 94
>54499_sbi-miR408:pmrd
Length = 205
Score = 101 bits (51), Expect = 3e-22
Identities = 142/174 (81%), Gaps = 25/174 (14%)
Strand = Plus / Plus
Query: 98 atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 154
||||| |||||||||| ||||||| ||||||| |||| ||||| ||||||||||| ||
Sbjct: 51 atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110
Query: 155 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagct 214
|| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151
Query: 215 cagctggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggct 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 65.9 bits (33), Expect = 2e-11
Identities = 50/55 (90%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 22 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 73
||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
>48975_osa-miR408:pmrd
Length = 213
Score = 77.8 bits (39), Expect = 4e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 227 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 269
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 67.9 bits (34), Expect = 4e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatgaggccatcaaca 59
|||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>55104_zma-miR408:pmrd
Length = 191
Score = 75.8 bits (38), Expect = 2e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 73.8 bits (37), Expect = 7e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 227 tgttgttgcttcctcccctgcactgcctcttccctggctcc 267
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 135 tgttgttgctccctcccctgcactgcctcttccctggctcc 175
>54690_tae-miR408:pmrd
Length = 187
Score = 63.9 bits (32), Expect = 6e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 226 ctgttgttgcttcctcccctgcactgcctcttccctggctcccc 269
||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 119 ctgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
Score = 56.0 bits (28), Expect = 2e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatgaggccatcaacaaaattt 65
||||||||||||| |||||||| |||||||||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
>48428_cpt-miR408:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 237 tcctcccctgcactgcctcttccctggctc 266
||||||| ||||||||||||||||||||||
Sbjct: 63 tcctcccatgcactgcctcttccctggctc 92
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 241 cccctgcactgcctcttccctggct 265
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 245 tgcactgcctcttccctggctccc 268
||||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 245 tgcactgcctcttccctggctccc 268
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 245 tgcactgcctcttccctggctc 266
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 245 tgcactgcctcttccctggctc 266
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 245 tgcactgcctcttccctggct 265
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 245 tgcactgcctcttccctggct 265
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 245 tgcactgcctcttccctggct 265
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 245 tgcactgcctcttccctggct 265
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 tgcactgcctcttccctggct 265
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 20 agacagggatgaggcagagcatgggatga 48
||||| |||||||||||||||||| ||||
Sbjct: 85 agacaaggatgaggcagagcatggaatga 57
