miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 161 bits (81), Expect = 2e-39
Identities = 90/93 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 52
Query: 61 ctaaatacatccatttctgcgacgagtaatttg 93
||| ||||||||||||| |||||||||||||||
Sbjct: 51 ctagatacatccatttcagcgacgagtaatttg 19
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 141 bits (71), Expect = 2e-33
Identities = 96/103 (93%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 5 ccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagttctaa 64
||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 9 ccctccgttccga-ttacttgtctcacatatggatgtatctagatgtattttagttctag 67
Query: 65 atacatccatttctgcgacgagtaatttgaaacggagggagta 107
||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 68 atacatccatttcagcgacgagtaatttggaacggagggagta 110
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctaga 48
||||||||||||||| ||||||| ||||| | |||||||||||||||
Sbjct: 110 tactccctccgttccaaattactcgtcgctgaaatggatgtatctaga 63
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 137 bits (69), Expect = 3e-32
Identities = 96/105 (91%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtt 64
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggag 105
|| ||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 65 ttagatatatccatttctgagacgagtaatttggaacggagggag 109
Score = 65.9 bits (33), Expect = 1e-10
Identities = 87/105 (82%)
Strand = Plus / Minus
Query: 3 ctccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagttct 62
||||||||||||| ||||||| ||| ||| |||||| |||||| | || || |||
Sbjct: 109 ctccctccgttccaaattactcgtctcagaaatggatatatctaaaactaaaatacatct 50
Query: 63 aaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 49 agatacatccatttctgcgacgagtaattcagaacggagggagta 5
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 135 bits (68), Expect = 1e-31
Identities = 95/104 (91%)
Strand = Plus / Plus
Query: 4 tccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagttcta 63
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagttata 67
Query: 64 aatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 68 gatacatccatttctgcgacgagtaatttggaacggagggagta 111
Score = 63.9 bits (32), Expect = 4e-10
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||||||||| ||||||| ||||||| ||||||||||||| | || || |
Sbjct: 111 tactccctccgttccaaattactcgtcgcagaaatggatgtatctataactaaaatacat 52
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggaggga 104
||| |||||||||||| | ||||||||||| | ||||||||||
Sbjct: 51 ctagatacatccatttattggacgagtaattcggaacggaggga 8
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 121 bits (61), Expect = 2e-27
Identities = 82/89 (92%)
Strand = Plus / Minus
Query: 5 ccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagttctaa 64
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 107 ccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctag 48
Query: 65 atacatccatttctgcgacgagtaatttg 93
|||||||||||| ||||||||||||||
Sbjct: 47 atacatccattttaacgacgagtaatttg 19
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 111 bits (56), Expect = 2e-24
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||||||| ||||||| | ||||||| || ||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagtt 64
Query: 61 ctaaatacatccatttctgcgacgagtaattt 92
||| |||||| |||||||||||||||||||||
Sbjct: 65 ctagatacattcatttctgcgacgagtaattt 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 65 atacatccatttctgcgacgagtaatttgaaacggagggagta 107
||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct: 47 atacatctatttctgcgacgaataattcgaaacggagggagta 5
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 109 bits (55), Expect = 7e-24
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||| |||||||||||| || ||| ||||||| | |||||||||||||
Sbjct: 51 ctagatacatccatttttgagacaagtaattcggaacggagggagta 5
Score = 69.9 bits (35), Expect = 6e-12
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||||||||||||||||||||| || ||||||||||||||| || || |
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgt 64
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||| |||||||||||| | |||| ||||||| |||||||||||||
Sbjct: 65 ctagatacatccattttttcgacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 105 bits (53), Expect = 1e-22
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||| |||||||||||||||||| ||| |||| || ||| || |||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagtt 64
Query: 61 ctaaatacatccatttctgcgacgagtaatttg 93
||| ||| || ||||||||||||||||||||||
Sbjct: 65 ctagatatattcatttctgcgacgagtaatttg 97
Score = 89.7 bits (45), Expect = 7e-18
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatct 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 65 atacatccatttctgcgacgagtaatttgaaacggagggagta 107
|||||||||| ||||||| ||||||| | |||||||||||||
Sbjct: 101 atacatccatacctgcgacaagtaattcggaacggagggagta 143
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 101 bits (51), Expect = 2e-21
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagtt 52
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||| ||| |||||||| | ||| ||||||| |||||||||||||
Sbjct: 51 ctagatagatccattttcgagacaagtaattccgaacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| |||||||||||| | |||||| |||||||| || || |
Sbjct: 5 tactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaatacgt 64
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||| ||||||||||||||| ||| ||||||| |||||||||||||
Sbjct: 65 ctagatacatccatttctgagacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 101 bits (51), Expect = 2e-21
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||| || ||||| |||||||||| | |||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagtt 64
Query: 61 ctaaatacatccatttctgcgacgagtaatt 91
||| |||||||||||||| |||| |||||||
Sbjct: 65 ctagatacatccatttctacgacaagtaatt 95
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 95.6 bits (48), Expect = 1e-19
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||| ||||||| ||||||| ||||| ||||||| |||||||||||| ||||||| ||
Sbjct: 111 tactctctccgtttcgaattatttgtcataggtatgaatgtatctagatttattttaatt 52
Query: 61 ctaaatacatccatttctgcgacgagtaattt 92
||| |||||| ||||||||| |||||||||||
Sbjct: 51 ctagatacattcatttctgcaacgagtaattt 20
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 95.6 bits (48), Expect = 1e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||| | ||| ||||||||| || |||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 64
Query: 61 ctaaatacatccattt 76
||| ||||||||||||
Sbjct: 65 ctagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 95.6 bits (48), Expect = 1e-19
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||| | ||| ||||||||| || |||||||||||||||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 62
Query: 61 ctaaatacatccattt 76
||| ||||||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 93.7 bits (47), Expect = 4e-19
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 111 tactccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagtt 52
Query: 61 ctaaatacatccatttctgcgacgagtaatt 91
||| |||||||||| || | ||| |||||||
Sbjct: 51 ctagatacatccatatccgagacaagtaatt 21
Score = 69.9 bits (35), Expect = 6e-12
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||| ||| |||||||||||| | | |||||||||||||||| || || |
Sbjct: 5 tactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacat 64
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
||| |||||| |||||||||||| ||||||| ||||||| ||||||
Sbjct: 65 ctagatacattcatttctgcgacaagtaattccaaacggatggagta 111
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 4 tccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagttcta 63
||||||||||| ||||||||||||| || ||||||||||||||| | ||| |||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 64 aatacatccatttctgcgacgagtaatttgaaacgga 100
|||||||||||| |||||| ||||||| | ||||||
Sbjct: 68 gatacatccatttatgcgacaagtaattcggaacgga 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 8 tccgttccgaattacttgtcgcaggtatggatgtatctaga 48
||||||||||||||||||||||| |||||||||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatctaga 64
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagtt 52
Query: 61 ctaaatacatccattt 76
||| ||||||| ||||
Sbjct: 51 ctagatacatctattt 36
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||| |||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct: 5 tactcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 61 ctaaatacatccattt 76
||| ||||||||||||
Sbjct: 65 ctagatacatccattt 80
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 83.8 bits (42), Expect = 4e-16
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||| | |||||| ||||| || ||||||||||||||| |||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagtt 62
Query: 61 ctaaatacatccatttct 78
||| ||||||||||||||
Sbjct: 61 ctagatacatccatttct 44
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 79.8 bits (40), Expect = 7e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||| | ||||| |||||| || ||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagtt 64
Query: 61 ctaaatacatccattt 76
||| ||||||||||||
Sbjct: 65 ctagatacatccattt 80
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 20 tacttgtcgcaggtatggatgtatctagatgtattttagttctaaatacatccatttct 78
||||||||| | | ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 102 tacttgtcgaaagaatggatgtatctagatgcattttagttctaaatacattcatttct 44
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 75.8 bits (38), Expect = 1e-13
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 5 ccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagttctaa 64
|||||||||| |||||| ||||||| || ||| ||||||||||||||||||||||||
Sbjct: 107 ccctccgttcggaattaattgtcgcgaaaatagatatatctagatgtattttagttctaa 48
Query: 65 atacatccatttctgcgacgagtaatttgaaacggagg 102
|||| |||||||| | ||| |||||| |||||||||
Sbjct: 47 atacgtccatttccgagacaggtaattccaaacggagg 10
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||| ||| | ||| |||||||| | | |||||||||||||||||||||||||||
Sbjct: 5 tactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagtt 64
Query: 61 ctaaatacatccatttct 78
|| ||||||||||||||
Sbjct: 65 atagatacatccatttct 82
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 36 ggatgtatctagatgtattttagttctaaatacatcc 72
|||||||||||||||||||||||||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctaaatacatcc 50
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| |||||||| ||| || ||| |||||||||||||||||||| ||
Sbjct: 121 tactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaatt 62
Query: 61 ctaaatacatccattt 76
|| ||||||||||||
Sbjct: 61 gtagatacatccattt 46
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||| || | ||| |||||||| ||| ||||||||| ||||| |||||||||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagtt 62
Query: 61 ctaaatacatccattt 76
||| ||||||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||| | ||| ||||||||| || ||| || ||||||||||||||||| ||
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattttaatt 62
Query: 61 ctaaatacatccattt 76
||| ||||||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||| || | ||| || ||||| ||| |||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 61 ctaaatacatccattt 76
||| ||| ||||||||
Sbjct: 65 ctagatatatccattt 80
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 69.9 bits (35), Expect = 6e-12
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
||||||||| |||| ||||||| ||| || ||| |||||||||||||||||||||||
Sbjct: 111 tactccctctgttcgaaattactcgtccaagaaatgaatgtatctagatgtattttagtt 52
Query: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
|| |||||||||||| | ||| ||||||| |||||||||||||
Sbjct: 51 atagatacatccatttttatgacaagtaattccgaacggagggagta 5
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtc 27
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttcggaattacttgtc 31
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 65.9 bits (33), Expect = 1e-10
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatcta-gatgtattttagt 59
|||||||||||| | || |||||||| ||| ||||||||||| | |||||||||||||
Sbjct: 122 tactccctccgtccgaaaatacttgtccgaggaatggatgtatcaaagatgtattttagt 63
Query: 60 tctaaatacatccattt 76
|||| ||||||||||||
Sbjct: 62 tctagatacatccattt 46
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 65.9 bits (33), Expect = 1e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 16 gaattacttgtcgcaggtatggatgtatctagatgtattttagttctaaatacatccatt 75
|||||||||||||||| ||||||||||||||| | ||||||||||| |||||| ||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacattcatt 87
Query: 76 t 76
|
Sbjct: 88 t 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 60 tctaaatacatccatttctgcgacgagtaatt 91
|||| ||||||||||||||||||| |||||||
Sbjct: 60 tctagatacatccatttctgcgacaagtaatt 29
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 37 gatgtatctagatgtattttagttctaaatacatccattt 76
|||||||||||| ||||||||||||||||||||| |||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacattcattt 80
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 36 ggatgtatctagatgtattttagttctaaatacatc 71
|||||||||||||||||||||||||||| |||||||
Sbjct: 61 ggatgtatctagatgtattttagttctacatacatc 96
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 34 atggatgtatctagatgtattttagttctaaatacatccattt 76
|||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 78 atggatatatctagatgtattttagttctagacacatccattt 36
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 34 atggatgtatctagatgtattttagttctaaatacatccattt 76
|||| ||||||||||||||||||||||||| |||||| |||||
Sbjct: 38 atgggtgtatctagatgtattttagttctagatacattcattt 80
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 36 ggatgtatctagatgtattttagttctaaatacat 70
|||||||||||||||||||||||||||| ||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 34 atggatgtatctagatgtattttagttctaaatacatccattt 76
||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 38 atggatgtatctagacgtattttacttctagatacatccattt 80
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 36 ggatgtatctagatgtattttagttctaaataca 69
|||||||||||||||||||||||||||| |||||
Sbjct: 86 ggatgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 38 atgtatctagatgtattttagttctaaatacat 70
|||||||||||||||||||||||||| ||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacat 47
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 20 tacttgtcgcaggtatggatgtatctagatgtattttagttctaaatacatccattt 76
|||||||| ||| ||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct: 102 tacttgtcataggaatgtatgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 56.0 bits (28), Expect = 1e-07
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 16 gaattacttgtcgcaggtatggatgtatctagatgtatttt-agttctaaatacatccat 74
|||||||||| |||| ||||||||||||||| | ||||| ||||||| ||||||||||
Sbjct: 98 gaattacttgccgcaaaaatggatgtatctagacgcatttttagttctagatacatccat 39
Query: 75 ttct 78
||||
Sbjct: 38 ttct 35
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtc 27
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtc 31
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtc 27
||||||||||||||| |||||||||||
Sbjct: 131 tactccctccgttccaaattacttgtc 105
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 38 atgtatctagatgtattttagttctaaatacatccattt 76
|||||| |||| |||||||||||||| ||||||||||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 38 atgtatctagatgtattttagttctaaatacatccattt 76
|||||||||||| ||||||||||||| |||||| |||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcattt 46
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 37 gatgtatctagatgtattttagttctaaatacat 70
||||||||||||||||||||| ||||| ||||||
Sbjct: 85 gatgtatctagatgtattttaattctagatacat 52
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 50.1 bits (25), Expect = 6e-06
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||| | ||| |||||||| || ||| ||||||||||| ||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagtt 61
Query: 61 ctaaatacatcca 73
|| |||||||||
Sbjct: 60 atagatacatcca 48
>RF00906;MIR1122;EU282716.1/1526-1412 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 36 ggatgtatctagatgtattttagttctaaatacatcc 72
||||||||||||| |||||| ||| ||||||||||||
Sbjct: 40 ggatgtatctagacgtatttcagtgctaaatacatcc 76
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 36 ggatgtatctagatgtattttagttcta 63
|||||||| |||||||||||||||||||
Sbjct: 49 ggatgtatttagatgtattttagttcta 76
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggatgtatctagatgtattttagttctaaatacatc 71
||||||||||||| ||||||||||||| |||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||| | |||||||||| | | ||||||| ||||| | ||||||||||
Sbjct: 5 tactccctccgtccggaattacttgacataaaaatggatgcatctaaacatattttagtt 64
Query: 61 ctaaatacatccattt 76
|||||||||| |||||
Sbjct: 65 ctaaatacattcattt 80
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgttccgaattacttgtc 27
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtc 31
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtc 27
||||||||||||||| |||||||||||
Sbjct: 131 tactccctccgttccaaattacttgtc 105
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 38 atgtatctagatgtattttagttctaaatacatccattt 76
||||||||||| |||||| ||| ||| ||||||||||||
Sbjct: 74 atgtatctagacgtatttcagtgctagatacatccattt 36
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 9e-05
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
|||||||||||||| ||| |||||||| | ||| ||||||||||| ||||||||||
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttattttagtt 61
Query: 61 ctaaatacatc 71
|| |||||||
Sbjct: 60 atagatacatc 50
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 82 acgagtaatttgaaacggagggagta 107
|||||||||||| |||||||||||||
Sbjct: 30 acgagtaatttggaacggagggagta 5
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 38 atgtatctagatgtattttagttcta 63
|||||| |||||||||||||||||||
Sbjct: 84 atgtatatagatgtattttagttcta 59
>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 38 atgtatctagatgtattttagttctaaata 67
||||||||| ||||||||||||| ||||||
Sbjct: 83 atgtatctaaatgtattttagttttaaata 54
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 tactccctccgttccgaattacttgtcgca 30
|||||||||||||| ||| |||||||||||
Sbjct: 121 tactccctccgttcagaaatacttgtcgca 92
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 38 atgtatctagatgtattttagttcta 63
|||||||||||| |||||||||||||
Sbjct: 84 atgtatctagatatattttagttcta 59
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 34 atggatgtatctagatgtattttagttctaaatacatccatt 75
||||||| ||||||| |||||||||| || |||||||||||
Sbjct: 38 atggatgaatctagacttattttagttatagatacatccatt 79
