miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42645_tae-MIR398:mirbase
Length = 120
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tcctgcggggtcgaactgggaacacatgggatacgaaccgcttgattgaggagcgactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 tcctgcggggtcgaactgggaacacatgggatacgaaccgcttgattgaggagcgactct 74
Query: 61 tatcaactcatgtgttctcaggtcgcccccgctgga 96
||||||||||||||||||||||||||||||||||||
Sbjct: 75 tatcaactcatgtgttctcaggtcgcccccgctgga 110
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 caactcatgtgttctcaggtcgcccccgctg 94
|||||||||||||||||||||||||| ||||
Sbjct: 55 caactcatgtgttctcaggtcgcccctgctg 85
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 67 ctcatgtgttctcaggtcgcccccgctgga 96
||||||||||||||||||||||| ||||||
Sbjct: 54 ctcatgtgttctcaggtcgcccctgctgga 83
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 67 ctcatgtgttctcaggtcgcccccgctgga 96
||||||||||||||||||||||| ||||||
Sbjct: 54 ctcatgtgttctcaggtcgcccctgctgga 83
>42817_zma-MIR398a:mirbase
Length = 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 catgtgttctcaggtcgcccccgc 92
||||||||||||||||||||||||
Sbjct: 117 catgtgttctcaggtcgcccccgc 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 67 ctcatgtgttctcaggtcgccccc 90
||||||||||||||| ||||||||
Sbjct: 24 ctcatgtgttctcagttcgccccc 1
>42588_sbi-MIR398:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 catgtgttctcaggtcgcccccgc 92
||||||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccccgc 109
>42818_zma-MIR398b:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 catgtgttctcaggtcgcccccg 91
|||||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccccg 107
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 tcatgtgttctcaggtcgcccc 89
||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccc 74
>40382_rco-MIR398b:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 tcatgtgttctcaggtcgcccc 89
||||||||||||||||||||||
Sbjct: 98 tcatgtgttctcaggtcgcccc 119
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 catgtgttctcaggtcgcccc 89
|||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccc 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tcctgcggggtcgaactgggaacacatg 28
|||||| |||||||| ||||||||||||
Sbjct: 19 tcctgcagggtcgaattgggaacacatg 46
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 catgtgttctcaggtcgcccc 89
|||||||||||||||||||||
Sbjct: 94 catgtgttctcaggtcgcccc 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tcctgcggggtcgaactgggaacacatg 28
|||||| |||||||| ||||||||||||
Sbjct: 28 tcctgcagggtcgaattgggaacacatg 55
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 catgtgttctcaggtcgcccc 89
|||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccc 86
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 catgtgttctcaggtcgcccc 89
|||||||||||||||||||||
Sbjct: 70 catgtgttctcaggtcgcccc 90
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 atgtgttctcaggtcgcccc 89
||||||||||||||||||||
Sbjct: 84 atgtgttctcaggtcgcccc 103
>40730_mtr-MIR398c:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 tgtgttctcaggtcgcccccgctg 94
||||||||||||||||||| ||||
Sbjct: 62 tgtgttctcaggtcgcccctgctg 85
