miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgaggcattcacataagaagaagatatataagtgaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgaggggaatgttggctggctcgaggcattcacataagaagaagatatataagtgaag 60
Query: 65 gtgtcggaccaggcttcattcctctcaaa 93
|||||||||||||||||||||||||||||
Sbjct: 61 gtgtcggaccaggcttcattcctctcaaa 89
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgaggc 33
|||||||||||||||||||||||||||||
Sbjct: 1 tttgaggggaatgttggctggctcgaggc 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 tcggaccaggcttcattcctctcaaa 93
||||||||||||||||||| ||||||
Sbjct: 81 tcggaccaggcttcattcccctcaaa 106
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttgaggggaatgttggctggctcgaggc 33
||||||||||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttggctggctcgaggc 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 tcggaccaggcttcattcctctcaaa 93
||||||||||||||||||| ||||||
Sbjct: 75 tcggaccaggcttcattcccctcaaa 100
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttgaggggaatgttggctggctcgaggc 33
||||||||||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttggctggctcgaggc 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 tcggaccaggcttcattcctctcaaa 93
||||||||||||||||||| ||||||
Sbjct: 98 tcggaccaggcttcattcccctcaaa 123
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgaggcat 35
|||| ||||||||||||||||||||||||||
Sbjct: 1 tttgtggggaatgttggctggctcgaggcat 31
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 gtcggaccaggcttcattcctctcaaa 93
|||||||||||||||||||||| ||||
Sbjct: 84 gtcggaccaggcttcattcctcgcaaa 110
>RF00075;mir-166;BT056134.1/149-273 4577:Zea mays
Length = 125
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgaggca 34
|||| |||||||||||||||||||||||||
Sbjct: 1 tttgtggggaatgttggctggctcgaggca 30
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 ttgaggggaatgttggctggctcga 30
|||||||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttggctggctcga 26
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus
trichocarpa
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ggggaatgttggctggctcgaggc 33
||||||||||||||||||||||||
Sbjct: 6 ggggaatgttggctggctcgaggc 29
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AP004125.3/115293-115185 39947:Oryza sativa
Japonica Group
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 ggggaatgttggctggctcgaggcattcacat 41
||||||||||||||||||||||| || |||||
Sbjct: 6 ggggaatgttggctggctcgaggtatccacat 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gtcggaccaggcttcattcctc 88
||||||||||||||||||||||
Sbjct: 83 gtcggaccaggcttcattcctc 104
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgagg 32
|||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tgtcggaccaggcttcattcctctcaa 92
||||||||||||||||||||| |||||
Sbjct: 71 tgtcggaccaggcttcattcccctcaa 97
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tgtcggaccaggcttcattcctctcaa 92
||||||||||||||||||||| |||||
Sbjct: 74 tgtcggaccaggcttcattcccctcaa 100
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ttgaggggaatgttggctggctcgagg 32
||||||||||||||| |||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 tttgaggggaatgttggctggctcgaggcat 35
|||||||||||||||| |||| |||||||||
Sbjct: 1 tttgaggggaatgttgtctgggtcgaggcat 31
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tcggaccaggcttcattcctctc 90
|||||||||||||||||||||||
Sbjct: 73 tcggaccaggcttcattcctctc 95
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 gtcggaccaggcttcattcctctcaa 92
|||||||||||||||||||| |||||
Sbjct: 96 gtcggaccaggcttcattcccctcaa 121
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 gtcggaccaggcttcattcctctcaa 92
|||||||||||||||||||| |||||
Sbjct: 83 gtcggaccaggcttcattcccctcaa 108
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 gtcggaccaggcttcattcctctcaa 92
|||||||||||||||||||| |||||
Sbjct: 119 gtcggaccaggcttcattcccctcaa 144
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 tgaggggaatgttggctggctcgagg 32
|||||||||||||| |||||||||||
Sbjct: 1 tgaggggaatgttgtctggctcgagg 26
