miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 228 bits (115), Expect = 1e-59
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 agggaataagtgaagctgccagcatgatctagctttggctagggatacagagaaagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agggaataagtgaagctgccagcatgatctagctttggctagggatacagagaaagagag 63
Query: 61 agatcagagctaaccctagctaggtcatgccctgacagcctcactccttccttct 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 agatcagagctaaccctagctaggtcatgccctgacagcctcactccttccttct 118
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 79.8 bits (40), Expect = 7e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 69 gctaaccctagctaggtcatgccctgacagcctcactccttcct 112
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 97 gctaaccctagctaggtcatgctctgacagcctcactccttcct 140
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 agggaataagtgaagctgccagcatgatctagctttgg 38
|||||| | |||||||||||||||||||||||||||||
Sbjct: 4 agggaaaaggtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 70 ctaaccctagctaggtcatgccctgacagcctcactccttcct 112
||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 ctaaccctagctaggtcatgctctgacagcctcactccttcct 109
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 70 ctaaccctagctaggtcatgccctgacagcctcactccttcct 112
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 58 ctaaccctagctaggtcatgctgtgacagcctcactccttcct 100
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 agggaataagtgaagctgccagcatgatctagctttgg 38
|||||| |||||||||||||||||||||||| ||||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctatctttgg 41
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 71 taaccctagctaggtcatgccctgacagcctcactccttcct 112
||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 64 taaccctagttaggtcatgctctgacagcctcactccttcct 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 ggaataagtgaagctgccagcatgatctagct 34
|||| |||||||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 agggaataagtgaagctgccagcatgatctagctttgg 38
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctagctttgg 41
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 69 gctaaccctagctaggtcatgccctgacagcctcactccttcct 112
||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 76 gctaaccctgactaggtcatgctgcgacagcctcactccttcct 119
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 72 aaccctagctaggtcatgccctgacagcctcactccttcct 112
||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 73 aacccaagctaggtcatgctctgacagcctcactccttcct 113
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 agggaataagtgaagctgccagcatgatctagctttgg 38
|||||| |||||||||||||||||||||||| ||||||
Sbjct: 4 agggaacaagtgaagctgccagcatgatctatctttgg 41
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 4 gaataagtgaagctgccagcatgatctagctttgg 38
|||| ||||||||||||||||||||||||||||||
Sbjct: 7 gaatgagtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 3 ggaataagtgaagctgccagcatgatctagctttgg 38
|||| ||||||||||||||||||||||||| |||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctaggtttgg 41
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 4 gaataagtgaagctgccagcatgatctagct 34
|||| ||||||||||||||||||||||||||
Sbjct: 7 gaatgagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatctagct 34
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatctagct 34
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatctagct 34
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 taaccctagctaggtcatgccctgacagcctcactccttcc 111
|||||||||||||||||||| |||||||||||| |||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttcc 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatcta 31
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 ggaataagtgaagctgccagcatgatcta 31
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 81 taggtcatgccctgacagcctcactccttcctt 113
|||||||||| | ||||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcctt 104
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatcta 31
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctag 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
